Locus 251

Sequence ID 2L_DroMel_CAF1
Location 728,032 – 728,129
Length 97
Max. P 0.790795
window403

overview

Window 3

Location 728,032 – 728,129
Length 97
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 97.55
Mean single sequence MFE -29.58
Consensus MFE -26.94
Energy contribution -26.94
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.91
SVM decision value 0.59
SVM RNA-class probability 0.790795
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 728032 97 + 22407834
GCGAAUAGAACUGCAAAUGGGCA--GACUCCACCCAGAAUGUCGGGGCUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU
(((........)))...((((..--.......))))...((((((((...((((((.....))))))...)))))))).(((((((......))))))) ( -29.30)
>DroSec_CAF1 106609 97 + 1
GCGAAUAGAACUGCAAAUGGGCA--GACUCCACCCAGAACGUCGGGGCUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU
(((........)))...((((..--.......))))....(((((((...((((((.....))))))...)))))))..(((((((......))))))) ( -28.60)
>DroSim_CAF1 111826 97 + 1
GCGAAUAGAACUGCAAAUGGGCA--GACUCCACCCAGAACGUCGGGGCUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU
(((........)))...((((..--.......))))....(((((((...((((((.....))))))...)))))))..(((((((......))))))) ( -28.60)
>DroEre_CAF1 117479 97 + 1
CCGAAUAGAACUGCAAAUGGGCA--GACUCCACCCAGAACGUCGGGGUUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU
..........((((......)))--)..............((((((((..((((((.....))))))..))))))))..(((((((......))))))) ( -31.40)
>DroYak_CAF1 112932 99 + 1
CCGAAUAGAACUGCAAAUGGGCAAAGACUCCACCCAGAACGUCGGGGUUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU
.................((((...........))))....((((((((..((((((.....))))))..))))))))..(((((((......))))))) ( -30.00)
>consensus
GCGAAUAGAACUGCAAAUGGGCA__GACUCCACCCAGAACGUCGGGGCUUAUUAGCUGCACGCUAAUUUAUUCCGGCAAACAGAAGGCACGGCUUCUGU
.................((((...........))))....(((((((...((((((.....))))))...)))))))..(((((((......))))))) (-26.94 = -26.94 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:13 2006