| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,905,749 – 6,905,863 |
| Length | 114 |
| Max. P | 0.781424 |
| Location | 6,905,749 – 6,905,863 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.75 |
| Mean single sequence MFE | -49.32 |
| Consensus MFE | -36.24 |
| Energy contribution | -35.22 |
| Covariance contribution | -1.02 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6905749 114 - 22407834 UUGCUGUUGGGCUGCCAGAAAGGAUCGUGGUGGUGGCGGCGGUUCGGGAAUGUCAUCAUCCCGCGUGAUUUCCGAGUCAUGCCCUGCCGCCGCUUUCACUGCAUCCUCUAUCGC ..((..((((....))))..(((((.(..((((.(((((((((..((((.((....))))))((((((((....))))))))...))))))))).))))..)))))).....)) ( -51.20) >DroVir_CAF1 139581 114 - 1 CUGCUGCUGGGCAGCUAGAAAGGAACGCGGUGGAGGCGGCGGUUCUGGUAUAUCAUCGUCACGCAUGAUGUCCGAAUCGCCGCUGGCCGCUGCCUUGACCGCCUCCUCGAUGGC .((((....))))((((...((((..(((((.(((((((((((((.((.(((((((((...)).)))))))))))))))))((.....)).))))).))))).))))...)))) ( -53.70) >DroPse_CAF1 124798 114 - 1 UUGCUGUUGGGCAGCAAGAAAAGAUCGCGGUGGGGGCGGCGGUUCGGGUAUGUCAUCAUCUCGCAUGAUCUCAGAGUCUUGGAUGGCCGCCGCCUUGACGGCCUCUUCGAUAGC ((((((.....))))))(((.((..(((((.((.((((((.(((((((..((..(((((.....)))))..))....))))))).)))))).))))).))..)).)))...... ( -47.20) >DroGri_CAF1 125791 114 - 1 UUGUUGCUGGGCAGCUAGAAAGGAGCGUGGUGGUGGCGGCGGUUCGGGUAUAUCAUCGUCCCGCAUGAUAUCCAAAUCGCCGCUGGCCGCUGCCUUUACCGCCUCUUCAAUGGC ....(((...)))((((...(((((.(((((((.(((((((((..(((((((((((((...)).))))))).......))).)..))))))))).))))))))))))...)))) ( -46.81) >DroYak_CAF1 102641 114 - 1 UUGCUGUUGGGCGGCCAGGAAGGAUCGUGGUGGUGGCGGCGGUUCGGGAAUGUCAUCAUCCCGGGUGAUUUCGGAGUCAUGCCCGGCCGCCGCUUUAACUGCGUCCUCUAUCGC ..((((.....))))..(((.(((.((..((...((((((((((.((((.((....))))))((((((((....))))..))))))))))))))...))..))))))))..... ( -51.10) >DroPer_CAF1 117393 114 - 1 UUGCUGUUGGGCAGCAAGAAAAGAUCGCGGUGGGGGCGGCGGUUCGGGUAUGUCAUCAUCUCGCAUGAUCUCAGAGUCUUGGAUGGCCGCCGCCUUGACGGCUUCUUCGAUAGC ((((((.....))))))...((((..((.((.((((((((((((((((..((..(((((.....)))))..))....)))))...))))))))))).)).)).))))....... ( -45.90) >consensus UUGCUGUUGGGCAGCAAGAAAGGAUCGCGGUGGUGGCGGCGGUUCGGGUAUGUCAUCAUCCCGCAUGAUCUCCGAGUCAUGGCUGGCCGCCGCCUUGACCGCCUCCUCGAUAGC ..(((((...))))).....((((..(((((.(.((((((((((((((.(((....)))))))...(((......)))......)))))))))).).))))).))))....... (-36.24 = -35.22 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:30 2006