| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,903,244 – 6,903,353 |
| Length | 109 |
| Max. P | 0.508995 |
| Location | 6,903,244 – 6,903,353 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.51 |
| Mean single sequence MFE | -36.27 |
| Consensus MFE | -19.74 |
| Energy contribution | -19.85 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.54 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6903244 109 - 22407834 UAGCUGAUCCAAGGGGCAAUGUGGUGCUGCCCAAAGGAUUGGCGCCAGGCGAUAUAACAGUGCCGUCCACAAAUGGAGCGAAGCCCACGAGAAAUCUGUAAUAUAAUA--A ..((..((((...(((((.........)))))...))))..))((..((((.........)))).((((....)))))).........((....))............--. ( -30.80) >DroVir_CAF1 136482 108 - 1 UAGCUGAGCCCAGGGGCAGGGCAGUGCUGGACAUGGCAUCCGUGUUGGGCGUUAUUACAGUGCCAUCCACAAAAGGAGCGAAGCCAACCAGAAAUCUAAAAGAAAGCA--- ..(((..(((....)))..(((...(((.(((((((...))))))).)))..........(((..(((......))))))..)))...................))).--- ( -32.30) >DroPse_CAF1 122264 109 - 1 UAGCUGACCCCAGGGGCAACGUGGUGCUGCCCAAGGGAUUGGCAACGGCCGAUAUAACAGUUCCAUCCACAAAUGGAGCGAAGCCGACCAGGAAUCUGAAAUGAAAGA--G ..((..(.(((..(((((.(.....).)))))..))).)..))..((((.(......).(((((((......)))))))...))))..(((....)))..........--. ( -35.20) >DroWil_CAF1 112712 109 - 1 UAGCUGAGCCCAUGGGUAGAGUGGUGCUACCCAUGGGAUUGGCACCAGGCGAUAUGACAGUUCCAUCCACGAAUGGUGCAAAACCCACCAGGAAACUGAAUUGGAAAU--U ........(((((((((((.......)))))))))))....((((((..((..(((.......)))...))..)))))).....(((.(((....)))...)))....--. ( -41.70) >DroAna_CAF1 95665 111 - 1 UAGCUGAACCCAGGGGCAGCGUGGUGCUGCCCAGGGGAUUGGCGCCGGGCGAUAUGACAGUUCCGUCCACAAAUGGAGCGAAACCCACCAGGAAUCUGCGGUUGAAAAUAG ..((..(.(((..(((((((.....)))))))..))).)..))((((.(.(((......(((((((......))))))).....((....)).)))).))))......... ( -43.80) >DroPer_CAF1 114863 109 - 1 UAGCUGACCCCAGGGGCAACGUGGUGCUGCCCAAGGGAUUGGCAACGGGCGAUAUAACAGUUCCAUCCACAAAUGGAGCGAAGCCGACCAGGAAUCUGAAAUGAAAGA--G ..((..(.(((..(((((.(.....).)))))..))).)..))....((((......).(((((((......)))))))...)))...(((....)))..........--. ( -33.80) >consensus UAGCUGACCCCAGGGGCAACGUGGUGCUGCCCAAGGGAUUGGCACCGGGCGAUAUAACAGUUCCAUCCACAAAUGGAGCGAAGCCCACCAGGAAUCUGAAAUGAAAAA__G ..(((((.(((..(((((.........)))))..))).)))))..(((...........((.((((......)))).))....((.....))...)))............. (-19.74 = -19.85 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:27 2006