Locus 2503

Sequence ID	2L_DroMel_CAF1
Location	6,902,066 – 6,902,159
Length	93
Max. P	0.994500

overview

Window 5

Location	6,902,066 – 6,902,159
Length	93
Sequences	6
Columns	99
Reading direction	forward
Mean pairwise identity	75.10
Mean single sequence MFE	-34.27
Consensus MFE	-21.97
Energy contribution	-20.97
Covariance contribution	-1.00
Combinations/Pair	1.27
Mean z-score	-4.52
Structure conservation index	0.64
SVM decision value	2.41
SVM RNA-class probability	0.993571
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6902066 93 + 22407834
UUUGAAGUUUUCAAUUCCGUAGUGCAUUGCAGUGUGUUUCAUUAUUUACUGCAAGCGCUGCGGAUUUGGCAACUUUGACGACCUUCAUCA---UCU---
.(..(((((.((((.((((((((((.((((((((.((......)).)))))))))))))))))).)))).)))))..)............---...--- ( -39.00)
>DroVir_CAF1 134764 96 + 1
AGCGAAACUCUCAAUUCCGUAGUGCAUUGCAGUUGAUUUUAGGAAUUACUGCAAGCGCUGCAGAAUUGGCAGCUCCGCUGACCGCAGACAACGUAU---
.(((......(((((((.(((((((.(((((((.(((((...))))))))))))))))))).)))))))((((...))))..)))...........--- ( -35.90)
>DroGri_CAF1 121368 96 + 1
AAUGUAACUUUCAAUUCCGUAGUGCAUUGCAGUUGAUUUAAGCAACUACUGCAUGCCCUGCAGAAUUGGCAGCUCUGUUGACCACAUACAGCAAAU---
.......((.(((((((.((((.((((.(((((..............))))))))).)))).))))))).))...(((((........)))))...--- ( -26.74)
>DroEre_CAF1 100712 96 + 1
UUUGAAGUUUUCAAUUCCGUAGUGCAUUGCAGUGUCUUUACUUAUUUACUGCAAGCGCUGCGGAUUUGGCAACUUUGACGACCUUAAUCA---UCUGGA
.(..(((((.((((.((((((((((.((((((((............)))))))))))))))))).)))).)))))..)...((.......---...)). ( -38.70)
>DroMoj_CAF1 147675 96 + 1
UGCGUAACUUUCAAUUCCGUAGUGCAUUGCAGUUGAUUUAAGGAAUUACUGCAAGCGCUGCAGAAUUGGCAGCUCCGUUGACCACAGACAGCAUAU---
(((....((.(((((((.(((((((.(((((((.(((((...))))))))))))))))))).))))))).))....(((.......))).)))...--- ( -32.70)
>DroAna_CAF1 94286 93 + 1
UUCGAGACUUUCAAUUCCGUAGUGCAUUGCAGUGUUUUUAAACUACAACUGCAUGCUCUGCGGACUUGGCAGAUUUGAAGACCAGGAGCA---ACU---
((((((.((.((((.(((((((.((((.(((((((.........)).))))))))).))))))).)))).)).))))))...........---...--- ( -32.60)
>consensus
UUCGAAACUUUCAAUUCCGUAGUGCAUUGCAGUGGAUUUAAGCAAUUACUGCAAGCGCUGCAGAAUUGGCAGCUCUGAUGACCACAAACA___UAU___
.(((.(.((.((((.((.(((((((.(((((((..............)))))))))))))).)).)))).)).).)))..................... (-21.97 = -20.97 +  -1.00)

alignment

secondary structure

dotplot

Window 6

Location	6,902,066 – 6,902,159
Length	93
Sequences	6
Columns	99
Reading direction	reverse
Mean pairwise identity	75.10
Mean single sequence MFE	-29.81
Consensus MFE	-20.53
Energy contribution	-20.34
Covariance contribution	-0.19
Combinations/Pair	1.14
Mean z-score	-3.31
Structure conservation index	0.69
SVM decision value	2.48
SVM RNA-class probability	0.994500
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6902066 93 - 22407834
---AGA---UGAUGAAGGUCGUCAAAGUUGCCAAAUCCGCAGCGCUUGCAGUAAAUAAUGAAACACACUGCAAUGCACUACGGAAUUGAAAACUUCAAA
---.((---((((....)))))).(((((..(((.((((.((.(((((((((..............))))))).)).)).)))).)))..))))).... ( -29.54)
>DroVir_CAF1 134764 96 - 1
---AUACGUUGUCUGCGGUCAGCGGAGCUGCCAAUUCUGCAGCGCUUGCAGUAAUUCCUAAAAUCAACUGCAAUGCACUACGGAAUUGAGAGUUUCGCU
---...(((.....)))...(((((((((..((((((((.((.(((((((((..............))))))).)).)).))))))))..))))))))) ( -36.84)
>DroGri_CAF1 121368 96 - 1
---AUUUGCUGUAUGUGGUCAACAGAGCUGCCAAUUCUGCAGGGCAUGCAGUAGUUGCUUAAAUCAACUGCAAUGCACUACGGAAUUGAAAGUUACAUU
---.....((((.((....))))))((((..((((((((.((.((((...(((((((.......))))))).)))).)).))))))))..))))..... ( -29.00)
>DroEre_CAF1 100712 96 - 1
UCCAGA---UGAUUAAGGUCGUCAAAGUUGCCAAAUCCGCAGCGCUUGCAGUAAAUAAGUAAAGACACUGCAAUGCACUACGGAAUUGAAAACUUCAAA
....((---((((....)))))).(((((..(((.((((.((.(((((((((..............))))))).)).)).)))).)))..))))).... ( -29.84)
>DroMoj_CAF1 147675 96 - 1
---AUAUGCUGUCUGUGGUCAACGGAGCUGCCAAUUCUGCAGCGCUUGCAGUAAUUCCUUAAAUCAACUGCAAUGCACUACGGAAUUGAAAGUUACGCA
---...(((..(((((.....)))))(((..((((((((.((.(((((((((..............))))))).)).)).))))))))..)))...))) ( -30.74)
>DroAna_CAF1 94286 93 - 1
---AGU---UGCUCCUGGUCUUCAAAUCUGCCAAGUCCGCAGAGCAUGCAGUUGUAGUUUAAAAACACUGCAAUGCACUACGGAAUUGAAAGUCUCGAA
---...---...((..((..(((((..((....))((((.((.(((((((((.((.........))))))).)))).)).)))).)))))..))..)). ( -22.90)
>consensus
___AGA___UGUUUGUGGUCAUCAAAGCUGCCAAUUCCGCAGCGCUUGCAGUAAUUACUUAAAUAAACUGCAAUGCACUACGGAAUUGAAAGUUUCAAA
.........................((((..(((.((((.((.(((((((((..............))))))).)).)).)))).)))..))))..... (-20.53 = -20.34 +  -0.19)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:25 2006