| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,901,112 – 6,901,220 |
| Length | 108 |
| Max. P | 0.775254 |
| Location | 6,901,112 – 6,901,220 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 91.04 |
| Mean single sequence MFE | -35.04 |
| Consensus MFE | -24.95 |
| Energy contribution | -25.31 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775254 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6901112 108 + 22407834 UUUUAUUUUGGCCUCAACUGUGCAUGUGUACACGGGU----GCACAGUGCGUAUACGUGAUGCGAUAGUUGUGCCCAUGUGGCCGAAAUGGUAUAUUUACUUAUCGAAACGA ..(((((((((((.((..(((((....))))).(((.----.((.....(((((.....))))).....))..))).)).)))))))))))..................... ( -35.40) >DroSec_CAF1 99028 97 + 1 UUUUUUUUUGGCCUCAACUGUGCAUGUG--------------CACAGUGCGUAUACGUGAUGCGAUAGUUGUGCCCAUGUGGCCGAAAUGGUUUAUUUACUUAUCGAAACG- .....((((((((.(((((((((....)--------------)))))).(((((.....))))).............)).)))))))).......................- ( -27.30) >DroSim_CAF1 93216 107 + 1 UUUUAUUUUGGCCUCAACUGUGCAUGUGUACACGGGC----GCACAGUGCGUAUACGUGAUGCGAUAGUUGUGCCCAUGUGGCCGAAAUGGUAUAUUUACUUAUCGAAACG- ..(((((((((((.((..(((((....))))).((((----(((.....(((((.....))))).....))))))).)).)))))))))))....................- ( -37.80) >DroEre_CAF1 99741 104 + 1 -UUUAUUUUGGCCUCAACUGUGCAUGUGUAC--GGGC----GCACAGUGCGUAUACGUGAUGCGAUAGUUGCGCCCAUGUGGCCGAAAUGGAAUAUUUACUUAUCGAAACG- -((((((((((((.((...((((....))))--((((----(((.....(((((.....))))).....))))))).)).))))))))))))...................- ( -40.50) >DroYak_CAF1 97818 108 + 1 -UUUAUUUUGCCCUCAACUGUGCAUGUGUAC--GGGCAUGUGCACAGUGCGUAUACGUGAUGCGAUAGUUGCGCCCAUGUGGCCGAAAUGGAAUAUUUACUUAUCGAAACG- -(((((((((.((.(((((((((((((((..--..)))))))))))))(((((..((.....)).....)))))...)).)).)))))))))...................- ( -34.20) >consensus UUUUAUUUUGGCCUCAACUGUGCAUGUGUAC__GGGC____GCACAGUGCGUAUACGUGAUGCGAUAGUUGUGCCCAUGUGGCCGAAAUGGUAUAUUUACUUAUCGAAACG_ ..(((((((((((...(((((((..................)))))))......(((((..(((.......))).))))))))))))))))..................... (-24.95 = -25.31 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:24 2006