Locus 2501

Sequence ID 2L_DroMel_CAF1
Location 6,898,121 – 6,898,231
Length 110
Max. P 0.754888
window4003

overview

Window 3

Location 6,898,121 – 6,898,231
Length 110
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 70.53
Mean single sequence MFE -35.40
Consensus MFE -14.85
Energy contribution -15.47
Covariance contribution 0.62
Combinations/Pair 1.24
Mean z-score -1.84
Structure conservation index 0.42
SVM decision value 0.49
SVM RNA-class probability 0.754888
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6898121 110 + 22407834
CAUCCCCGGGGCGUCGUCCUCGGCA------AAGUAGAAA--CUUUCUAAGCAGCGAUGACGCCGUGAAACUCACGUGGCCAAACCACCUGGGGCAUGGUACAUCAUUUUCAGAGAAU
((((((((((((((((((....((.------...((((..--...)))).))...)))))))))(((.....)))((((.....)))))))))).))).................... ( -40.10)
>DroPse_CAF1 117743 113 + 1
UUU-UCCGGGUCGUGGAUUGUGGCGUGGUUGAAGUGAAAUCUCUUUACAAAUAGAGACAACAUCGUGAAGCACGG--U-ACGAGUUGCCUUU-AAGUGGUAGAACAUUUCCAGGAAAG
.((-(((.((..(((..(((((.((((.((.(.(((...(((((........)))))...)))..).)).)))).--)-)))).(((((...-....)))))..)))..)).))))). ( -32.90)
>DroSec_CAF1 96100 110 + 1
CAUCCCCGGGGCGUCGUCCUCGGCA------AAGUAGAAA--CUUUCUAAGCAGCGAUGACGCCGUGAAACUCACGUGGCCAAACCACCUGGGGCAUGGUACAUCAUUUUUAGAGAAU
((((((((((((((((((....((.------...((((..--...)))).))...)))))))))(((.....)))((((.....)))))))))).))).................... ( -40.10)
>DroEre_CAF1 96662 110 + 1
CAUCCCCGGGGCGUCGUCCUCGGCA------AAGUAGAAA--CUUUCUAAGCAGCGAUGACGCCGUGAAACUCACGUGGGCAAACCACCUGGGCCAUGGAACAUAAUUUUUAGAGAAU
(((.((((((((((((((....((.------...((((..--...)))).))...)))))))))(((.....)))((((.....)))))))))..))).................... ( -36.20)
>DroYak_CAF1 94534 110 + 1
CAUCCCCGGGGCGUCGUCCUCGGCA------AAGUAGAAA--CUUUCUAAGCAGCGAUGACGGCGUGAAACUCACGUAGACCAAACACCUGGGCCAUGGAACAUAAUUUUUAGAGAAU
(((.((((((.(((((((....((.------...((((..--...)))).))...)))))))(((((.....)))))..........))))))..))).................... ( -31.20)
>DroPer_CAF1 110335 113 + 1
UUU-UCCGGGUCGUGGAUUGUGGCGUGGUUGAAGUGAAAUCUCUUUUCAAAUAGAGACAACAUCGUGAAACACGG--U-ACGAGUUGCCUUU-AAGUGGUAGAACAUUUCCAGGAAAG
.((-(((.((..(((..(((((.((((..(((.((....(((((........)))))..)).))).....)))).--)-)))).(((((...-....)))))..)))..)).))))). ( -31.90)
>consensus
CAUCCCCGGGGCGUCGUCCUCGGCA______AAGUAGAAA__CUUUCUAAGCAGCGAUGACGCCGUGAAACUCACGUGGACAAACCACCUGGGACAUGGUACAUCAUUUUCAGAGAAU
....((((((((((((....))))..........(((((.....)))))....))........((((.....))))...........))))))......................... (-14.85 = -15.47 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:23 2006