Locus 2499

Sequence ID 2L_DroMel_CAF1
Location 6,894,101 – 6,894,208
Length 107
Max. P 0.510356
window4000

overview

Window 0

Location 6,894,101 – 6,894,208
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 92.99
Mean single sequence MFE -31.64
Consensus MFE -25.98
Energy contribution -26.18
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -1.30
Structure conservation index 0.82
SVM decision value -0.05
SVM RNA-class probability 0.510356
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6894101 107 - 22407834
GUAUUCAAAUUAAGCGACUUUACUGCGGUUUGCAGCAGCAAGAACUCCUUCCUCCAGGACAUUCGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA
.......................((((((((((....)))))..((((.(((....)))..........((((.....))))))))..((((....))))))))).. ( -28.50)
>DroSec_CAF1 92081 107 - 1
GAAUUCAAAUUAAGCGACUUUACUGCGGUUUGCAGCAGCAAGGAUUCCUUCCUCCAGGACAUUCGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA
.......................(((((.((((....))))(((((((...((((...((....))...((((.....))))))))....)).)))))..))))).. ( -29.90)
>DroSim_CAF1 86251 107 - 1
GAAUUCAAAUUAAGCGACUUUACUGCGGUUUGCAGCAGCAAGCACUCCUUCCUCCAGGACAUUCGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA
.......................((((((((((....)))))).((((.(((....)))..........((((.....))))))))..((((....)))).)))).. ( -29.60)
>DroEre_CAF1 92673 106 - 1
AAAUUCAAAUUA-ACGAGUUUACUGCGGCUUGGAGCAGCAAGGACUCCUUCCUGCAGGAGAUUCGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA
...(((......-((((((((.((((((...(((((......).))))...)))))).))))))))..(((((.....)))))..)))((((........))))... ( -35.00)
>DroYak_CAF1 90384 107 - 1
AAAUUCAAAUUAAACGAGUUUACUGCGGCUUGGGGCAGCAAGGACCCCAUCCUGCAGGACAUUUGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA
...(((.......((((((...((((((..((((((......).)))))..))))))...))))))..(((((.....)))))..)))((((........))))... ( -35.20)
>consensus
GAAUUCAAAUUAAGCGACUUUACUGCGGUUUGCAGCAGCAAGGACUCCUUCCUCCAGGACAUUCGUAAUGGGUAACUGGCCCGGAGAAGUGGCAAUCCACCCGCAAA
.......................((((((((((....)))))..((((.(((....)))..........((((.....))))))))..((((....))))))))).. (-25.98 = -26.18 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:20 2006