| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,876,694 – 6,876,811 |
| Length | 117 |
| Max. P | 0.760261 |
| Location | 6,876,694 – 6,876,811 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 90.75 |
| Mean single sequence MFE | -29.56 |
| Consensus MFE | -23.32 |
| Energy contribution | -22.96 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6876694 117 - 22407834 GGGAGGUCAAAUGGUAACAGGAAACUGGAUAUGGCCAGAAGCUGAGAGCUUCCACAGAUACACGAGAUUUUAAUCUGGAAAACGUGUUGAGCUUGGGAAAUUAGUUAAAGUCUUAGU (((((((((.((.....(((....))).)).)))))...((((((....(((((.((..(((((((((....))))......)))))....)))))))..))))))....))))... ( -26.70) >DroSec_CAF1 80797 117 - 1 GGGAGGUCAAAUGGUAACAGGAAACUGGAUAUGGCCAGGAGCUGAGGGCUUCCACAGAUACAGGAGAUUUUAAUCUGGAAAGCGUGUUUAGCUUGGGAAAUUAGUUAAAGUCUUAGU .(((((((...((((..(((....)))......)))).........)))))))..........((((((((((.((((.((((.......))))......))))))))))))))... ( -31.10) >DroSim_CAF1 74859 117 - 1 GGGAGGUCAAAUGGUAACAGGAAACUGGAUAUGGCCAGGAGCUAAGAGCUUCCACAGAUACACGAGAUUUUAAUCUGGAGAGCGUGUUGAGCUUGGGAAAUUAGUUAAAGUCUUAGU (((((.((.........(((....)))....((((.....)))).)).)))))..........((((((((((.((((.((((.......))))......))))))))))))))... ( -31.30) >DroEre_CAF1 81379 115 - 1 GGGAGGUCAAAUGGUAACAGGAAACUGGAUAUGGCCAGGAGCUGA--GCAUUCAGAGAUACACGAGAUUUUAAUCUAGAAAGCGUGUUGAGUUUGGGAAAUGAGUUAAAAGCUUAGC ....(((((.((.....(((....))).)).)))))....(((((--((.((((((...(((((...((((......)))).)))))....))))))...(......)..))))))) ( -27.60) >DroYak_CAF1 79071 115 - 1 GGGAGGUCAAAUGGUAACAGGAAACUGAAUAUGGCCAGGAGCUGU--GUUCCCAGAGAUACACGAGAUUUUAAUCUAGAAAGCUUGUUGAGUUUGGGAAAUUAGUGAAAGGCUUAGC ...(((((...((((..(((....)))......))))...((((.--.((((((((..((.(((((.((((......)))).)))))))..))))))))..))))....)))))... ( -31.10) >consensus GGGAGGUCAAAUGGUAACAGGAAACUGGAUAUGGCCAGGAGCUGAG_GCUUCCACAGAUACACGAGAUUUUAAUCUGGAAAGCGUGUUGAGCUUGGGAAAUUAGUUAAAGUCUUAGU .....(((...((((..(((....)))......))))(((((.....)))))....)))....(((((((((((..(..((((.......))))......)..)))))))))))... (-23.32 = -22.96 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:18 2006