Locus 2496

Sequence ID 2L_DroMel_CAF1
Location 6,876,130 – 6,876,223
Length 93
Max. P 0.545262
window3997

overview

Window 7

Location 6,876,130 – 6,876,223
Length 93
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.16
Mean single sequence MFE -23.30
Consensus MFE -16.18
Energy contribution -16.93
Covariance contribution 0.76
Combinations/Pair 1.30
Mean z-score -1.12
Structure conservation index 0.69
SVM decision value 0.02
SVM RNA-class probability 0.545262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6876130 93 - 22407834
AAUUCGAUGAAAAAGGUUAUGAAAGGUCUGAGUUUUUGCCCGGGUUUUGACAUUUCGGCCAUAUUGAAAU--GGCGGUUGACUUU---UCGGAGUGGU
.((((.((((......))))((((((((...(((...((....))...)))....(.(((((......))--))).)..))))))---)).))))... ( -21.00)
>DroSec_CAF1 80233 95 - 1
AAUUCGAUGAAAAAGGUUAUGAAAGGUCUGAGUUUUUGCCCGGGUUUUGACAUUUCAGCCAUAUUGAAAUGUGGCGGUUGACUUU---UCGGAGUGGU
..(((((.....((((((((((((.(((.(((..(......)..))).))).)))))(((((((....)))))))...)))))))---)))))..... ( -22.90)
>DroSim_CAF1 74319 95 - 1
AAUUCGAUGAAAAAGGUUAUGAAAGGUCUGAGUUUUUGCCCGGGUUUUGACAUUUCAGCCAUAUUGAAAUGUGGCGGUUGACUUU---UCGGAGUGGU
..(((((.....((((((((((((.(((.(((..(......)..))).))).)))))(((((((....)))))))...)))))))---)))))..... ( -22.90)
>DroEre_CAF1 80776 95 - 1
AAUUCGAUGAAAAAGGUUAUGAAAGGUCAGAGUUUUUACCCGGGUUUUGACAUUUCAGCCAUAUUAAAAUGUGGCGGUUGACUUU---UCGGAGUGGU
..(((((.....((((((((((((.(((((((..(......)..))))))).)))))(((((((....)))))))...)))))))---)))))..... ( -26.70)
>DroYak_CAF1 78495 96 - 1
AAUUCGAUGAAAAAGGCUAUGAAAGGUCAGAGUUUUAACCCGGGUCUUGACAUUUCAGCCAUAUUGAAAUGUGGCGGUUGACUUU--AACGAAGUGGU
..((((.((((...((((.(((((.(((((..(((......)))..))))).)))))(((((((....)))))))))))...)))--).))))..... ( -24.60)
>DroAna_CAF1 75878 85 - 1
AUUUAUGUAAUAUAGGUCA--AAGGGACUGACUUUAUGGCCGGAAUG---------AGCCA--AUGACUCCUGGCAGUUGAAACCGAAAGUGAGGAGC
..............(((((--((((......)))).)))))((....---------..)).--....(((((.((..(((....)))..)).))))). ( -21.70)
>consensus
AAUUCGAUGAAAAAGGUUAUGAAAGGUCUGAGUUUUUGCCCGGGUUUUGACAUUUCAGCCAUAUUGAAAUGUGGCGGUUGACUUU___UCGGAGUGGU
..(((((.....(((((((...(((..(((.((....)).)))..))).........(((((((....)))))))...)))))))...)))))..... (-16.18 = -16.93 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:16 2006