| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,867,515 – 6,867,610 |
| Length | 95 |
| Max. P | 0.505619 |
| Location | 6,867,515 – 6,867,610 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.75 |
| Mean single sequence MFE | -21.75 |
| Consensus MFE | -12.45 |
| Energy contribution | -13.53 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6867515 95 - 22407834 ------GGCCGACUGUGUAUUCUCUCCAUUUGAAU--UCGAUUCAAGUGAAUUGUUCUCAAAUU-----------UUACACGCUCCACACACUCAAGUGCUUUGGGGAUUAAUU ------........(((((........((((((..--.((((((....))))))...)))))).-----------.))))).(((((..(((....)))...)))))....... ( -19.70) >DroPse_CAF1 89491 105 - 1 AUAUAUAGCC--CUGCGU-----UUCCAUUCUCCU--UCGAUUAAAGUGAAUUGUGCUCCAAGUUGUCCGUGUCUUUGCACACUCCCGCCACUCAAGCACAUUGGGGAUUAAUU ........((--((....-----....((((..((--(......))).))))((((((...(((.((..((((......))))....)).)))..))))))..))))....... ( -17.90) >DroSec_CAF1 71810 95 - 1 ------AGCCGACUGUGUAUUCCCUCCAUUUGAAU--UUGAUUCAAGUGAAUUGUUCUCAAAAU-----------UUACACGCUCCCCGCACUCAAGUGCUUUGGGGAUUAAUU ------........(((((.......(((((((((--...)))))))))..(((....)))...-----------.)))))..(((((((((....))))...)))))...... ( -24.50) >DroSim_CAF1 65002 95 - 1 ------AGCCGACUGUGUAUUCCCUCCAUUUGAAU--UUGAUUCAAGUGAAUUGUUCUCAAAAU-----------UUACACACUCCCCGCACUCAAGUGCUUUGGGGAUUAAUU ------.......((((((.......(((((((((--...)))))))))..(((....)))...-----------.)))))).(((((((((....))))...)))))...... ( -25.00) >DroEre_CAF1 71544 100 - 1 -UAUAUAGACGACUGUAUUCUCCCUACAUUUGGAU--UUGAUUCAAGUGAAUCGUUCUCAAAAU-----------UUACACGCUCCCUGCACUCAAGUGUCUUGGGGAUUAAUU -.((((((....))))))..((((((((((((((.--.((((((....))))))...)).....-----------......((.....))...)))))))...)))))...... ( -22.70) >DroYak_CAF1 69943 92 - 1 ------AGACGGCAGUAUUUU-----CAUUUGGGAGGCACAUUCAAGUGAAUUGUUCUCAAAAU-----------UUACACGCUCCCAGCACUCAAGUGUUUUGGGGAUUAAUU ------.((..(((((....(-----((((((((.......))))))))))))))..)).....-----------........(((((((((....))))..)))))....... ( -20.70) >consensus ______AGCCGACUGUGUAUUCCCUCCAUUUGAAU__UUGAUUCAAGUGAAUUGUUCUCAAAAU___________UUACACGCUCCCCGCACUCAAGUGCUUUGGGGAUUAAUU ..........................(((((((((.....)))))))))..................................(((((((((....))))...)))))...... (-12.45 = -13.53 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:14 2006