| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,862,255 – 6,862,349 |
| Length | 94 |
| Max. P | 0.989238 |
| Location | 6,862,255 – 6,862,349 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 73.78 |
| Mean single sequence MFE | -25.78 |
| Consensus MFE | -19.95 |
| Energy contribution | -20.78 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.77 |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.989238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6862255 94 - 22407834 -AAC-AAAUAUU-GUUUUCUUCAUUUUAUAAUUUGCAGAAUGUAGGCUGGGCCGACAUUGAUGGUGACUUCUCCAAGGUGACGGCUCACCUGCGCAA -...-.....((-((.((((.((..........)).)))).(((((.(((((((.((((..(((.(....).))).)))).)))))))))))))))) ( -28.60) >DroSec_CAF1 66602 77 - 1 -AAC-AAUCACU-GUU-----------------UACAGAAUGUAGGCUGGGCCGACAUUGAUGGUGACUUCUCCAAGGUGACGGCUCAUCUGCGCAA -...-.....((-(..-----------------..)))...(((((.(((((((.((((..(((.(....).))).)))).)))))))))))).... ( -26.20) >DroSim_CAF1 59229 77 - 1 -AAC-AAUCAUU-GUU-----------------UACAGAAUGUAGGCUGGGCCGACAUUGAUGGUGACUUCUCCAAGGUGACGGCUCAUCUGCGCAA -...-.......-...-----------------........(((((.(((((((.((((..(((.(....).))).)))).)))))))))))).... ( -24.10) >DroEre_CAF1 66369 96 - 1 UAUAUAAACAUU-GCUUCCCUAAUAUUACAAUUUGCAGAAUGUAGGCUGGGCCGACAUUGACGGUGACUUCUCGAAGGUGACGGCCCACCUGCGCAA ..........((-(((((..(((.........)))..))).(((((.(((((((.((((..(((.(....))))..)))).)))))))))))))))) ( -29.20) >DroWil_CAF1 52969 91 - 1 -AAA-AUUUAGUAAUUUUCUAAAUUUU----UUUGCAGAACGUUGGCUGGGUGGAUCUCGAUGGUGAUUUCUCCAAAGUCACAGGACAUUUGCGUAA -(((-((((((.......)))))))))----...(((((........((((..((((........))))..))))..(((....))).))))).... ( -19.40) >DroYak_CAF1 64425 85 - 1 -AACUAAACAUU-G----------AUUAUAAUUUCCAGAAUGUAGGCUGGGCCAACAUUGAUGGCGACUUCUCCAAGGUGACGGCCCACCUGCGCAA -...........-.----------.................(((((.((((((..((((..(((.(....).))).))))..))))))))))).... ( -27.20) >consensus _AAC_AAACAUU_GUU_________UU____UUUGCAGAAUGUAGGCUGGGCCGACAUUGAUGGUGACUUCUCCAAGGUGACGGCUCACCUGCGCAA ........................................((((((.(((((((.((((..(((.(....).))).)))).)))))))))))))... (-19.95 = -20.78 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:08 2006