| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 725,728 – 725,832 |
| Length | 104 |
| Max. P | 0.657429 |
| Location | 725,728 – 725,832 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.51 |
| Mean single sequence MFE | -38.02 |
| Consensus MFE | -24.44 |
| Energy contribution | -26.92 |
| Covariance contribution | 2.48 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 725728 104 + 22407834 UGUCCACACUCGUACGACACUCGUACCGAUGUGGCACUACAAAUCGCCGGUCGAGUGGGUGGCUGCAGAUUUGUGGUCAUGGGCAGGAGAGAUCUUCGAGAGA--------A ((((((((((((((((.....)))).))).)))(.((((((((((..((((((......))))))..))))))))))).))))))((((....))))......--------. ( -38.70) >DroSec_CAF1 104296 112 + 1 UGUCCACACUCGUGCGACACUCGUACCGAUGUGGCACUACAAAUCGCCGGUCGAGUGGGUGGUUGCAGAUCUGUGGCCAUGGGCAGCAGAGAUCUCCGAGAGAAGAAGAGAA (((((.((((((((((.....))))).(((.((((..........)))))))))))).(((((..((....))..)))))))))).......(((.(....).)))...... ( -40.20) >DroSim_CAF1 109488 104 + 1 UGUCCACACUCGUGCGACACUCGUACCGAUGUGGCACUACAAAUCGCCGGUCGAGUGGGUGGUUGCAGAUCUGUGGCCAUGGGCAACAGAGAUCUCCGAGAGA--------A (((((.((((((((((.....))))).(((.((((..........)))))))))))).(((((..((....))..)))))))))).......((((...))))--------. ( -39.40) >DroEre_CAF1 115139 103 + 1 UGUCCACACUCGUACGACACUCGUAGCGAUGUGGCACUACAAAUCGCUGGUCGAGUGGGUGGCUGCAC-UUUUUGGUCACGGGCAGGAGAGUUCUCCGAGUGA--------A ......((((((..(..(((((((((((((.((......)).)))))))..)))))).((((((....-.....)))))))..).((((....))))))))).--------. ( -41.20) >DroYak_CAF1 110612 83 + 1 UGUCCACACUCGUACGACACUCGUAGCGAUGUGGCACUACAAAUCGCUGGUCGAGUGGGUGGCUGUA---------------------AGGUUUUCCGAGUGA--------A ......(((((......(((((((((((((.((......)).)))))))..))))))((.((((...---------------------.))))..))))))).--------. ( -30.60) >consensus UGUCCACACUCGUACGACACUCGUACCGAUGUGGCACUACAAAUCGCCGGUCGAGUGGGUGGCUGCAGAUCUGUGGCCAUGGGCAGCAGAGAUCUCCGAGAGA________A (((((.((((((((((.....))))).(((.((((..........)))))))))))).(((((((((....))))))))))))))........................... (-24.44 = -26.92 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:11 2006