Locus 2486

Sequence ID 2L_DroMel_CAF1
Location 6,836,465 – 6,836,566
Length 101
Max. P 0.944079
window3981

overview

Window 1

Location 6,836,465 – 6,836,566
Length 101
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 76.68
Mean single sequence MFE -23.10
Consensus MFE -14.65
Energy contribution -15.68
Covariance contribution 1.03
Combinations/Pair 1.18
Mean z-score -1.96
Structure conservation index 0.63
SVM decision value 1.34
SVM RNA-class probability 0.944079
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6836465 101 + 22407834
AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCAUACAACAAGAGGGCUAUAGAUAAGGGGCAACUAUACGGAAAUCUACUCGUAUA--UGCGAUUCUAGCAUU
..((.((((.....(((((((((....(((..........))).))).))))))...)))).))(((((((........)))))))--(((.......))).. ( -26.20)
>DroSec_CAF1 40647 86 + 1
AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCAUACAACA-GAGGGCUAUAGAUAAGGGGCAACUAUACGGAAAUCUACUCGUAUC--U--------------
..((.((((.....(((((((((....(((.........)-)).))).))))))...)))).)).((((((........)))))).--.-------------- ( -22.30)
>DroSim_CAF1 32602 86 + 1
AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCAUACAACA-GAGGGCUAUAGAUAAGGGGCAACUAUACGGAAAACUACUCGUAUC--C--------------
..((.((((.....(((((((((....(((.........)-)).))).))))))...)))).)).((((((........)))))).--.-------------- ( -22.30)
>DroEre_CAF1 39816 93 + 1
AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCAUACAACA-GAGGGCUAUAGAUAAGGGGCAACUAUACGGA---------AUAUGUAUGCGUGACUAGCAUG
((((.((((.....(((((((((....(((.........)-)).))).))))))...)))).((((((((..---------...)))))).)).....)))). ( -23.80)
>DroYak_CAF1 37237 100 + 1
AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCGUACAACA-GAGGGCUAUAGAUAAGGGGCAACUAUACGGAUA--UACUUGUAUAUAUGCGUUGCUACCAUU
.((((((((......(((((...((.......))...)))-)))))))))).....(((((((((((((((...--...))))))).....)))))).))... ( -27.70)
>DroAna_CAF1 34339 97 + 1
AUGUAACACAACAAGUCUAUGCCACUAUCUCCAUUCAGCA-GAGUGCCAUAGAUAAGAGAAAA-AACACAUAUA--UGUAUGUACAUAUUCCC--UUACCGUU
.........(((..(((((((.((((..((......))..-.)))).)))))))(((.(((..-...(((((..--..))))).....))).)--))...))) ( -16.30)
>consensus
AUGUAGCCCAACAAGUCUGUGCCACUAUCUCCAUACAACA_GAGGGCUAUAGAUAAGGGGCAACUAUACGGAAA__UACUCGUAUA__UGCG___CUA_CAUU
.....((((.....(((((((((.....(((..........)))))).))))))...))))....((((((........)))))).................. (-14.65 = -15.68 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:01 2006