Locus 2485

Sequence ID 2L_DroMel_CAF1
Location 6,831,744 – 6,831,846
Length 102
Max. P 0.759872
window3980

overview

Window 0

Location 6,831,744 – 6,831,846
Length 102
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 75.94
Mean single sequence MFE -41.47
Consensus MFE -16.73
Energy contribution -16.84
Covariance contribution 0.11
Combinations/Pair 1.27
Mean z-score -2.24
Structure conservation index 0.40
SVM decision value 0.50
SVM RNA-class probability 0.759872
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6831744 102 + 22407834
CGG-ACGCCACGCAGUCCGCCACUGGGUCAUCUGACA-----UCCAG--C-GGUCUGGCCAUGCCAUUCAAUCCGCUGGAGGCGAUGCGCCAGGGUUAUCCGCCCAACUAC
(((-(.(((.((((...((((.....(((....))).-----(((((--(-((..((((...))))......)))))))))))).))))....)))..))))......... ( -41.00)
>DroPse_CAF1 45305 108 + 1
AGGCGCGCC-CGCAGUCCCCCACUCGGCCAUCUGGCCAGCUCUGCCU--CGGCUCUGGCCAUGCCCUUCAAUCCUUUGGAGGCCAUGCGGCAGGGCUAUCCUCCGAACUAC
.(((((...-.)).)))......((((((....))))(((((((((.--((((....)))(((.(((((((....))))))).)))).))))))))).......))..... ( -44.30)
>DroYak_CAF1 32263 102 + 1
CGA-ACGCCACGCAGCCCGCCACUCGGUCAUCUGACC-----UCCAG--C-GGCCUGGCCAUGCCAUUCAAUCCGCUGGAGGCGAUGCGCCAGGGCUAUCCGCCCAACUAU
...-......((((...((((....((((....))))-----(((((--(-((..((((...))))......)))))))))))).))))...((((.....))))...... ( -43.70)
>DroMoj_CAF1 51097 107 + 1
-GGCGCGC-UCGUAGUCCUCCGCUGAGCCUGAUCGGCGCA--UCCAACGCGGCGCUGGCUCUGCCCACCAAUCCACUGGAGGCCAUGCGCCAGAACUACCCGCCCAACUAC
-((.(((.-..(((((.((.((((((......))))))..--........(((((((((.((.((............)))))))).))))))).))))).)))))...... ( -39.00)
>DroAna_CAF1 29595 102 + 1
CGG-ACGCCACGUAGUCCUCCGUUGAGCCAUCUCACC-----GCCAG--C-GGCCUGCCCAUGCCCUUCAAUCCCCUGGAGGCCAUGCGCCAGGGCUAUCCGCCCAACUAU
.((-((........)))).((((((.((.........-----)))))--)-))...((.((((.((((((......)))))).)))).))..((((.....))))...... ( -36.50)
>DroPer_CAF1 37163 108 + 1
AGGCGCGCC-CGCAGUCCCCCACUCGGCCAUCUGGCCAGCUCUGCCU--CGGCUCUGGCCAUGCCCUUCAAUCCUUUGGAGGCCAUGCGGCAGGGCUAUCCUCCGAACUAC
.(((((...-.)).)))......((((((....))))(((((((((.--((((....)))(((.(((((((....))))))).)))).))))))))).......))..... ( -44.30)
>consensus
CGG_ACGCCACGCAGUCCCCCACUCGGCCAUCUGACC_____UCCAG__C_GCUCUGGCCAUGCCCUUCAAUCCGCUGGAGGCCAUGCGCCAGGGCUAUCCGCCCAACUAC
(((...(((.((((...........(((((.........................)))))..(((.((((......)))))))..))))....)))...)))......... (-16.73 = -16.84 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:00 2006