Locus 2484

Sequence ID 2L_DroMel_CAF1
Location 6,830,205 – 6,830,306
Length 101
Max. P 0.810727
window3979

overview

Window 9

Location 6,830,205 – 6,830,306
Length 101
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 86.81
Mean single sequence MFE -24.43
Consensus MFE -22.75
Energy contribution -22.75
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.93
SVM decision value 0.65
SVM RNA-class probability 0.810727
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6830205 101 + 22407834
-------GGCC----------CGCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGACA
-------....----------...((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...................... ( -24.00)
>DroVir_CAF1 48661 99 + 1
-------------------CUGUUUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUACCCGAGUGCGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUCCAUUUCGACA
-------------------.....((((((((((((((((.(((..((((.........))))...))).)))))))..........)))))))))...................... ( -22.80)
>DroPse_CAF1 43850 115 + 1
GUGUGCCGCCCU---GCUUUUCUCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGACA
............---.........((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...................... ( -24.00)
>DroGri_CAF1 41113 99 + 1
-------------------CUGUUUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUCCAUUUCGACA
-------------------.....((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...................... ( -24.10)
>DroMoj_CAF1 49415 110 + 1
-------GGCU-GUGGGCUCUGUGUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGCGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUCCAUUUCGACA
-------.(..-(((((......(((((((((((((((((.(((..((((.........))))...))).)))))))..........)))))))))).........)))))..).... ( -27.66)
>DroPer_CAF1 35702 115 + 1
GUGUGCCGCCCU---GCUUUUCUCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGACA
............---.........((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...................... ( -24.00)
>consensus
_______G_CC________CUCUCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUCCAUUUCGACA
........................((((((((((((((((.(((..((((.........))))...))).)))))))..........)))))))))...................... (-22.75 = -22.75 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:59 2006