| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 724,599 – 724,689 |
| Length | 90 |
| Max. P | 0.999874 |
| Location | 724,599 – 724,689 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 94.56 |
| Mean single sequence MFE | -32.76 |
| Consensus MFE | -31.52 |
| Energy contribution | -31.40 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.96 |
| SVM decision value | 4.34 |
| SVM RNA-class probability | 0.999874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 724599 90 + 22407834 ACCAGCAGCAAUCUUGGGAUUGUAUUUAGAUGAUGCUGCAGUCUGCCGGGGAUGCAGUCUCCGCGCAGAGACAAGCUGGGGCAAGAAACU .(((((.((((((....))))(((((.....))))).))..((((((((((((...))))))).))))).....)))))........... ( -32.70) >DroSec_CAF1 103229 87 + 1 ACCAGCAGCAAUCUUGGGAUUGUAUUUAGA---UGCUGCGGUCUGCCGGGGAUGCAGUCUCCGCGCAGAGACAAGCUGGGGCAAGAAACU .(((((.((((((....)))))).......---........((((((((((((...))))))).))))).....)))))........... ( -32.60) >DroSim_CAF1 108400 87 + 1 ACCAGCAGCAAUCUUGGGAUUGUAUUUAGA---UGCUGCAGUCUGCCGGGGAUGCAGUCUCCGCGCAGAGACAAGCUGGGGCAAGAAACU .(((((.((((((....)))))).......---........((((((((((((...))))))).))))).....)))))........... ( -32.60) >DroEre_CAF1 114077 87 + 1 ACCAGCAGCAAUCUCGGGAUUGUAUUUAGA---UGGUGGAGUCCGCCGGGGAUGCAGUUUCCGCGCAGAGACAAGCUGGGGCAAGAAACU .(((((.....((((((((((((((((...---((((((...)))))).))))))))..))).)).))).....)))))........... ( -30.90) >DroYak_CAF1 109506 87 + 1 ACCAGCAGCAAUCUCGGGAUUGUAUUCAGA---UGCUGGAGUCUGCCGGAGAUGCAGUCUCCGCGCAGAGACAAGCUGGGGCAAGAAACU .(((((.((((((....)))))).(((((.---..))))).((((((((((((...))))))).))))).....)))))........... ( -35.00) >consensus ACCAGCAGCAAUCUUGGGAUUGUAUUUAGA___UGCUGCAGUCUGCCGGGGAUGCAGUCUCCGCGCAGAGACAAGCUGGGGCAAGAAACU .(((((.((((((....))))))..................((((((((((((...))))))).))))).....)))))........... (-31.52 = -31.40 + -0.12)
| Location | 724,599 – 724,689 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 94.56 |
| Mean single sequence MFE | -26.06 |
| Consensus MFE | -22.26 |
| Energy contribution | -22.30 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814422 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 724599 90 - 22407834 AGUUUCUUGCCCCAGCUUGUCUCUGCGCGGAGACUGCAUCCCCGGCAGACUGCAGCAUCAUCUAAAUACAAUCCCAAGAUUGCUGCUGGU ((((...((((...((..((((((....)))))).))......))))))))((((((..((((.............)))))))))).... ( -25.32) >DroSec_CAF1 103229 87 - 1 AGUUUCUUGCCCCAGCUUGUCUCUGCGCGGAGACUGCAUCCCCGGCAGACCGCAGCA---UCUAAAUACAAUCCCAAGAUUGCUGCUGGU ......(((((...((..((((((....)))))).))......)))))(((((((((---(((.............))).)))))).))) ( -27.52) >DroSim_CAF1 108400 87 - 1 AGUUUCUUGCCCCAGCUUGUCUCUGCGCGGAGACUGCAUCCCCGGCAGACUGCAGCA---UCUAAAUACAAUCCCAAGAUUGCUGCUGGU ((((...((((...((..((((((....)))))).))......))))))))((((((---(((.............))).)))))).... ( -25.32) >DroEre_CAF1 114077 87 - 1 AGUUUCUUGCCCCAGCUUGUCUCUGCGCGGAAACUGCAUCCCCGGCGGACUCCACCA---UCUAAAUACAAUCCCGAGAUUGCUGCUGGU ...........(((((..(((((((((.(....))))).....((.((...)).)).---...............)))))....))))). ( -23.20) >DroYak_CAF1 109506 87 - 1 AGUUUCUUGCCCCAGCUUGUCUCUGCGCGGAGACUGCAUCUCCGGCAGACUCCAGCA---UCUGAAUACAAUCCCGAGAUUGCUGCUGGU ...........(((((.....(((((.((((((.....)))))))))))....((((---(((.............))).))))))))). ( -28.92) >consensus AGUUUCUUGCCCCAGCUUGUCUCUGCGCGGAGACUGCAUCCCCGGCAGACUGCAGCA___UCUAAAUACAAUCCCAAGAUUGCUGCUGGU ...........(((((.....(((((.(((.((.....)).))))))))...................(((((....)))))..))))). (-22.26 = -22.30 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:10 2006