Locus 2474

Sequence ID 2L_DroMel_CAF1
Location 6,797,575 – 6,797,688
Length 113
Max. P 0.639485
window3965

overview

Window 5

Location 6,797,575 – 6,797,688
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 68.83
Mean single sequence MFE -33.60
Consensus MFE -19.42
Energy contribution -20.18
Covariance contribution 0.75
Combinations/Pair 1.18
Mean z-score -1.42
Structure conservation index 0.58
SVM decision value 0.22
SVM RNA-class probability 0.639485
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6797575 113 + 22407834
GCCACCUGGCUGAAUAGCCGUGGUACCACCAAAGACAGUAGAAUGACUGUGAGUCUCCGCUAU------GUG-UUGCUCGCUUACGCCGCUAGGUGUCGCUUAGUUAAAAUUAUAAUAUU
((((((((((.(...(((.(((....))).....(((((......)))))((((...(((...------)))-..)))))))....).))))))))..)).................... ( -28.60)
>DroSim_CAF1 66348 112 + 1
GCCACCUGGCUGAACAGACGUGGUACCACCAAAGACACCAGAAUGG-UGUUAGUCUCCGCUAU------GUG-UUCUUCGCUUUCGCCGCUAGGUGUCGCUUAGCCAAAAUUAUAAUUUU
((((((((((.....(((((((....)))....((((((.....))-)))).))))..((...------(((-.....)))....)).))))))))..)).................... ( -31.60)
>DroEre_CAF1 66685 100 + 1
GCCACCUGGCCG-GCAGCCGUGGUACCACC-----CA---GUUGGG-UGUGAGUCUCCGCUUUUGA----CGUUAGCUCAAUGUCGCCGCUAGGUGUCGCAGAAG------UAUUAUUUA
((((((((((.(-((....((((.((((((-----(.---...)))-))...))..))))....((----((((.....)))))))))))))))))..)).....------......... ( -38.60)
>DroYak_CAF1 67783 109 + 1
GCCACCUGGCGU-GCAACCGUGCUAUCACA-----CU---GUUGGG-UGUGGGUCUCCGCUCUUAUUUUGUG-UUGCUCGAUUUUGCCGCUAGGUACCGCAUAACCAAAUUUAUUACAUA
((.((((((((.-((((.((.((...((((-----..---..((((-.((((....)))).))))...))))-..)).))...))))))))))))...)).................... ( -35.60)
>consensus
GCCACCUGGCUG_ACAGCCGUGGUACCACC_____CA___GAAGGG_UGUGAGUCUCCGCUAU______GUG_UUGCUCGAUUUCGCCGCUAGGUGUCGCAUAACCAAAAUUAUAAUAUA
((((((((((.........(((....)))...................((((((...(((.........)))...)))))).......))))))))..)).................... (-19.42 = -20.18 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:45 2006