| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,793,938 – 6,794,029 |
| Length | 91 |
| Max. P | 0.616098 |
| Location | 6,793,938 – 6,794,029 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.21 |
| Mean single sequence MFE | -39.60 |
| Consensus MFE | -18.74 |
| Energy contribution | -18.42 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6793938 91 + 22407834 GGGCUCGAAGGGCCAAACAAUGUG--------------------GGCCAAAAUGG-GGCCAGAAGGCCGUGCUACUGCUGGGGCGGCGACAUGGUCCCAUUUCCGCGUCUGC .((((.....))))...(((((((--------------------((....(((((-(((((....(((((.(((....))).)))))....))))))))))))))))).)). ( -42.10) >DroSec_CAF1 60718 106 + 1 GGGCUCGAAGGGCCACACAAAGUGGGCCAAAGUGGGCCAAAGUGGGCCAAAAUGG-GGCUAAAAGGCCGUGCUACUGCUG-----GCGACAUGGUCUUAUUUCCGCGUCUGC .((((((...((((.(((...)))))))....))))))...(..((((.((((((-(((((....((((.((....))))-----))....)))))))))))..).)))..) ( -42.70) >DroSim_CAF1 62641 101 + 1 GGGCUCGAAGGGCCACACAAAGUGGGCCA----------AAGUGGGCCAAAAUGG-GGCUAAAAGGCCAUGCUACUGCUGGGGCGGCGACAUGGUCUCAUUUCCGCGUCUGC .((((((...((((.(((...))))))).----------...))))))...(((.-((.....((((((((...((((....))))...)))))))).....)).))).... ( -40.60) >DroEre_CAF1 63146 88 + 1 GGUCUCGAAGGGCCACGCAAAGUG--------------------GGCCAAAAUGG-GGCUAGAAGGCCGUACUACUG---GGACGGCGACAUGGUCCCAUUUCCGCGUCUGC ((.(.((..((.((((.....)))--------------------).)).((((((-(((((....(((((.((....---)))))))....))))))))))).)).).)).. ( -37.40) >DroYak_CAF1 63857 86 + 1 GGCGUCGAUGGGCCCUGCCAAGUG--------------------GGCCAAAACGGUGGCUAGAAGGCCGUACUAUUG---GG---GCGACAUGGUCUCAUUUCCGUGUCUGC .((.(((((((((((........)--------------------))))........((((....))))....)))))---).---))(((((((........)))))))... ( -35.20) >consensus GGGCUCGAAGGGCCACACAAAGUG____________________GGCCAAAAUGG_GGCUAGAAGGCCGUGCUACUGCUGGG_CGGCGACAUGGUCUCAUUUCCGCGUCUGC ..........((((.(((...)))....................((((........))))....)))).................(((((.(((........))).))).)) (-18.74 = -18.42 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:43 2006