Locus 247

Sequence ID 2L_DroMel_CAF1
Location 723,718 – 723,831
Length 113
Max. P 0.845991
window398

overview

Window 8

Location 723,718 – 723,831
Length 113
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 80.15
Mean single sequence MFE -29.92
Consensus MFE -18.36
Energy contribution -18.20
Covariance contribution -0.16
Combinations/Pair 1.21
Mean z-score -2.15
Structure conservation index 0.61
SVM decision value 0.77
SVM RNA-class probability 0.845991
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 723718 113 - 22407834
CCAACGUCCAGUGUCCAGCGUCCAGUGUCCCUGGCUGCUGGAUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGGCACGAAACGAAAA
(((.((.(((((((((((((.((((.....)))).))))))))..(((.(((((((.(((((....))))))).))))).)))...)))))))...))).............. ( -39.30)
>DroPse_CAF1 128056 87 - 1
-------------------------UGCUCCU-UCUCUUGGCUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGGUCGAGCACGAAACGAAAA
-------------------------(((((..-(((.(..(((..(((.(((((((.(((((....))))))).))))).)))..)))..).)))..)))))........... ( -25.40)
>DroSec_CAF1 102343 92 - 1
C---------------------CAGUGUUCCUGACUGCUGGUUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGGCACGAAACGAAAA
.---------------------..(((..((..(((((..(((..(((.(((((((.(((((....))))))).))))).)))..)))..)))).)..))))).......... ( -28.30)
>DroSim_CAF1 107517 99 - 1
C--------------CAGCGUCCAGUGUCCCUGGCUGCUGGUUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUUGGGCACGAAACGAAAA
.--------------...(((...(((.(((...((((..(((..(((.(((((((.(((((....))))))).))))).)))..)))..))))...))))))...))).... ( -34.30)
>DroAna_CAF1 66719 89 - 1
------------------CG------GCUCCCGUCUCUGGGCUCCAAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCAGCCCGGGAACGAAACGAAAA
------------------..------.....(((..((((((((((((.(((((((.(((((....))))))).))))).))......))).)))))))..)))......... ( -26.20)
>DroPer_CAF1 129822 87 - 1
-------------------------UGCUCCU-UCUCGUGGCUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGGUCGAGCACGAAACGAAAA
-------------------------(((((..-.(((((((((..(((.(((((((.(((((....))))))).))))).)))..)))).)))))..)))))........... ( -26.00)
>consensus
_________________________UGCUCCUGUCUCCUGGCUCAGAAUUUAUGCAUAUGACCUUAGUUAUUGACAUAAUUUCGUGGCUGGCGGAUCGGGCACGAAACGAAAA
.........................(((((....((.((((((..(((.(((((((.(((((....))))))).))))).)))..)))))).))...)))))........... (-18.36 = -18.20 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:09 2006