Locus 2464

Sequence ID 2L_DroMel_CAF1
Location 6,757,673 – 6,757,784
Length 111
Max. P 0.887312
window3952

overview

Window 2

Location 6,757,673 – 6,757,784
Length 111
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 69.76
Mean single sequence MFE -26.42
Consensus MFE -9.92
Energy contribution -10.32
Covariance contribution 0.39
Combinations/Pair 1.43
Mean z-score -2.07
Structure conservation index 0.38
SVM decision value 0.95
SVM RNA-class probability 0.887312
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6757673 111 - 22407834
UAUUCAUCUCCUUGGCCGCUUGUGAUAUUGCCAAAAAGGCAAAUGCGAGCCAUAAAUUAAGUCCCGAGACGA--AAAGCAA-AGGCACAAGCACAACAACCAGAUGAGCGAAA-A
..(((((((..(((...(((((((...((((......(((........))).........(((....)))..--...))))-...)))))))....)))..))))))).....-. ( -30.30)
>DroSim_CAF1 25175 93 - 1
UAUUCCUCCCCUUGGCCGCUUGUGAUAUUGCCAAAAAGGCAAAUGCGAGCCAUAAAUUAAGUCCCGAGACGA--AAAGCGA-AG------------------CAUGAGCGAAA-A
..((((((..(((.((.(((((((...(((((.....))))).)))))))..........(((....)))..--...)).)-))------------------...))).))).-. ( -24.30)
>DroEre_CAF1 27956 101 - 1
UAUUCGUCCCCUUGACUGCUGGCCAUAUUGCCAAAAAGGCAAAUGCGACCCAUAAAUUAUGUCCCGAGACGA--GAAGAAA-AGGCA---------CAGCCACAUGAGCGAAA--
..((((..(...((...(((((((...(((((.....))))).................((((....)))).--.......-.))).---------))))..)).)..)))).-- ( -24.70)
>DroWil_CAF1 34418 114 - 1
AGUUCGUCAUCUUGGCUGCUUUCGAUAUUGCCAAAAUGGCAAAUGCGGGUCAUAAAUUAUGCCCCAUGCCGCGACAAUCGGCCAGAACAAGAAAAUCAGCCAUACGAGCAGAG-A
.((((((.....((((((.((((....(((((.....)))))(((.(((.((((...))))))))))((((.......))))........))))..)))))).))))))....-. ( -37.10)
>DroYak_CAF1 26730 112 - 1
UAUUCCUCCCCUUGACCGCUUGCCAUAUUGCCAAAAAGGCAAAUGCGACCCAUAAAUUAUGUCCCGAGACGA--AAAGAAG-GGGCAGAAGCACAACAACCACAUGAGCGAAAAA
..(((..((((((...((((((((.............)))))..)))............((((....)))).--....)))-)))..)))((.((.........)).))...... ( -22.92)
>DroAna_CAF1 26011 91 - 1
CACGCUUCUUCUUGACCAUUGGCUAUAUUGCCAAAAAGGCAAAUGCGACCCAUAAAUUAUGUCCCGAAGCAA--CAA----------------CAACAGCCCCACAGGC------
...(((((...(((.((.(((((......)))))...)))))..(.(((...........))).))))))..--...----------------.....(((.....)))------ ( -19.20)
>consensus
UAUUCCUCCCCUUGACCGCUUGCGAUAUUGCCAAAAAGGCAAAUGCGACCCAUAAAUUAUGUCCCGAGACGA__AAAGCAA_AGGCA______CAACAGCCACAUGAGCGAAA_A
................((((((.....(((((.....)))))..................(((....)))..................................))))))..... ( -9.92 = -10.32 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:33 2006