Locus 2463

Sequence ID 2L_DroMel_CAF1
Location 6,755,394 – 6,755,508
Length 114
Max. P 0.550450
window3951

overview

Window 1

Location 6,755,394 – 6,755,508
Length 114
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 87.59
Mean single sequence MFE -23.35
Consensus MFE -15.70
Energy contribution -15.32
Covariance contribution -0.37
Combinations/Pair 1.09
Mean z-score -1.66
Structure conservation index 0.67
SVM decision value 0.03
SVM RNA-class probability 0.550450
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6755394 114 + 22407834
CAAAAAAAAAAAAAAAACAAUGAAAUCGCUGUGUAAAUAAGACGAUAUCGCCCAAUUAGAAAGCGGAACAGG--GAUGUAUAUCAUCAUCCUGAACGGAAACGGUUUGAAUUUGUG
................((((......((((.(.(((....(.((....)))....))).).))))((((.((--((((........))))))...((....))))))....)))). ( -20.60)
>DroSim_CAF1 22868 104 + 1
CAAA----------AAACAAUGAAAUCGCUGUGUAAAUAAGACGAUAUCGCCCAAUUAGAAAGCGGAACCGG--GAUGUAUAUCAUCAUCCUGAACGGAAACGGUUUGAAUUUGUG
....----------..((((......((((.(.(((....(.((....)))....))).).))))(((((((--((((........))))))....(....))))))....)))). ( -22.00)
>DroEre_CAF1 25667 107 + 1
CA-------AAAAAAAACUAUGAAAUUGCUGUGUAAAUAAGACGAUAUCGGCCAAUUAGAGAGCGGAACAGG--GAUGUAUAUCAUCGUCCUAAACGGAAACGGUUUGAAUUUGUG
((-------((...((((.......(((((.(.(((......((....)).....))).).)))))....((--((((........))))))...((....))))))...)))).. ( -20.60)
>DroYak_CAF1 24330 114 + 1
CAUACAAAGAAAAAAAAC--UGAAAUCGCUGUGUAAAUAAGACGAUAUCGCCCAAUUAGGGAGCGGAACAGGAUGAUGUAUAUCAUCAUCCAAAACGGAAACGGUUUGAAUUUGUG
..((((((......((((--((...(((((............((....))(((.....))))))))....((((((((.....))))))))..........))))))...)))))) ( -30.20)
>consensus
CAAA_____AAAAAAAACAAUGAAAUCGCUGUGUAAAUAAGACGAUAUCGCCCAAUUAGAAAGCGGAACAGG__GAUGUAUAUCAUCAUCCUAAACGGAAACGGUUUGAAUUUGUG
..........................((((.(.(((......((....)).....))).).))))((((.((..((((.....))))..))....((....))))))......... (-15.70 = -15.32 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:32 2006