Locus 2461

Sequence ID 2L_DroMel_CAF1
Location 6,741,147 – 6,741,238
Length 91
Max. P 0.620671
window3949

overview

Window 9

Location 6,741,147 – 6,741,238
Length 91
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 80.26
Mean single sequence MFE -18.02
Consensus MFE -10.77
Energy contribution -10.88
Covariance contribution 0.11
Combinations/Pair 1.22
Mean z-score -1.75
Structure conservation index 0.60
SVM decision value 0.18
SVM RNA-class probability 0.620671
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6741147 91 - 22407834
CCUCGAU--CU--CCCAUUGUGGUGGCAGUUAACUUGAUUAUUUUACAAAUAAUUGAAAAGUUUCCCUUUUCCUCGCCAUUGCGAAAAUUGCACA
.......--..--....(((..(((((.........(((((((.....)))))))((((((.....))))))...)))))..))).......... ( -19.90)
>DroGri_CAF1 10037 88 - 1
CCC-CAU--CGACUCCUUUGCGGUAACAGUUAACUUGAUUAUUUUACAAAUAAUUGAAAAGGCUGCCA----AGCGCCAUUGUACAAAUUGCACA
...-...--.........((((((.(((((....(..((((((.....))))))..)...(((.((..----.))))))))))....)))))).. ( -14.10)
>DroSim_CAF1 8485 91 - 1
CCCCGAU--CU--CCCAUUGUGGUGGCAGUUAACUUGAUUAUUUUACAAAUAAUUGAAAAGUUUCCCUUUUACUCGCCAUUGCGAAAAUUGCACA
.......--..--....(((..((((((((.((((((((((((.....)))))))...)))))........))).)))))..))).......... ( -17.80)
>DroYak_CAF1 8170 91 - 1
CCCCGAU--CU--CCCAUUGUGGUGGCAGUUAACUUGAUUAUUUUACAAAUAAUUGAAAAGUUUCCCUUUUCCUCGCCAUUGCGAAAAUUGCACA
.......--..--....(((..(((((.........(((((((.....)))))))((((((.....))))))...)))))..))).......... ( -19.90)
>DroMoj_CAF1 10041 77 - 1
CCC-CAU--UUA----CUUGCGGUAACAGUUAACUUGAUUAUUUUGCAAAUAAUUGAAAAGGCUG-----------UCAUUGUACAAAUUGCAAA
...-...--...----..((((((.((((((...(..((((((.....))))))..)...)))))-----------).))))))........... ( -14.20)
>DroAna_CAF1 8809 92 - 1
GCCCCCUCGCU--CUCAUUGUGGUGGCAGUUAACUUGAUUAUUUUCCAAAUAAUUGAAAAGUUUC-CUUUUCCUCGCCAUUGCGAAAAUUGCACA
........((.--....(((..(((((.........(((((((.....)))))))((((((....-))))))...)))))..))).....))... ( -22.20)
>consensus
CCCCCAU__CU__CCCAUUGUGGUGGCAGUUAACUUGAUUAUUUUACAAAUAAUUGAAAAGUUUCCCUUUUCCUCGCCAUUGCGAAAAUUGCACA
.................((((((((((.(....)(..((((((.....))))))..)..................)))))))))).......... (-10.77 = -10.88 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:30 2006