Locus 2459

Sequence ID 2L_DroMel_CAF1
Location 6,737,973 – 6,738,072
Length 99
Max. P 0.524594
window3947

overview

Window 7

Location 6,737,973 – 6,738,072
Length 99
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.94
Mean single sequence MFE -25.20
Consensus MFE -16.95
Energy contribution -17.15
Covariance contribution 0.20
Combinations/Pair 1.16
Mean z-score -1.31
Structure conservation index 0.67
SVM decision value -0.02
SVM RNA-class probability 0.524594
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6737973 99 - 22407834
CACUCCAAGUAGCGCAUCAUAAUCU---CCUUUACUAAAUCCAUAGCCUUUGGUGGUGUGGUUCUACCGGGAGAGCUACCUGCGAUUCAGUUCACAGGAGUA
.(((((..(((((.........(((---(((.........(((((.((......))))))).......))))))))))).((.((......)).))))))). ( -27.89)
>DroSec_CAF1 4786 99 - 1
CACUCCAAGUAGCCCAUCAUAGUCC---CCUUUACCCAAUCCAUAGCCUCUAGUCGUAUGGUUCUACCGGGAGAGCUAUCUGCGAUUCAGUUCACAGGAGUA
.(((((..((((......(((((((---((..........(((((((.....))..))))).......))).)).))))))))((......))...))))). ( -19.93)
>DroSim_CAF1 5258 99 - 1
UACUUCAAGUAGCCCAUAAUAAUCC---CCUUUACUCAAUCCAUAGCCUCUAGUCGUAUGGUUCUACCGGGAGAGCUAUCUGCGAUUCAGUUCACAGGAGUA
.........................---....(((((.....(((((((((....(((......)))..)))).)))))(((.((......)).)))))))) ( -18.60)
>DroEre_CAF1 7384 99 - 1
CACUCCAAGUAGCACAUCAUAAUAC---UCCUUACUCAAUCCACAGCCCCUGGUGGUGUGGUUCUACCGGGAGAGCUACCUGCGAUUCAGUUCGCAGGAGUA
.(((((..(((((..((....)).(---((((........(((((.((....).).))))).......))))).))))).(((((......)))))))))). ( -33.26)
>DroYak_CAF1 4936 98 - 1
CACUUCAUAU----CAUCAUAAUCCUCCUCCUUACUCAAUUCAUAGCCCCUGGUGGUGUGGUUCUACCGGGAGAGCUACCUGCGAUUCAGUUCGCAGGAGUA
..........----..................(((((......(((((((((((((.......)))))))).).)))).((((((......))))))))))) ( -31.60)
>DroAna_CAF1 5009 97 - 1
UA-UCCAAAAAGA-AACCUUAAUGCUUAU-CUUACU--UUCCACAGCCCUUGGUAGUUUGGUUCUAUAGGGAGAGCUAUCUGCGCUUUAGCUCCCAGGAGUA
..-(((.......-..(((((......((-(..(((--..(((.......))).)))..)))....))))).((((((.........))))))...)))... ( -19.90)
>consensus
CACUCCAAGUAGC_CAUCAUAAUCC___CCCUUACUCAAUCCAUAGCCCCUGGUGGUGUGGUUCUACCGGGAGAGCUACCUGCGAUUCAGUUCACAGGAGUA
.(((((..............................................((((.((((((((......))))))))))))((......))...))))). (-16.95 = -17.15 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:28 2006