| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,728,686 – 6,728,800 |
| Length | 114 |
| Max. P | 0.549779 |
| Location | 6,728,686 – 6,728,800 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.35 |
| Mean single sequence MFE | -35.97 |
| Consensus MFE | -22.99 |
| Energy contribution | -24.18 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6728686 114 - 22407834 A-AAUA-UCGUAAGCCACUUACCGUGUGAUACUUCUGCAUGAAAUCCCGCUGCGGACUGUUGGGCGUGCUCCGGCCACUCAUUGGCGGACUCUGCCUGUCCAUGGAGCGACCGCGA .-....-((((..(((((...(((((((....(((.....)))....))).))))...))..))).(((((((((((.....))))((((.......)))).)))))))...)))) ( -37.20) >DroVir_CAF1 61305 110 - 1 --AUUA-UCG---AGCUCUUACCGUAUGAUAUUUCUGCAUGAAAUCCCGCUGCGGACUGUUGGGCGUACUACGCCCGCUCAUGGGCGGACUUUGUCUGUCCAUGGAACGGCCGCGU --..((-(((---.((.......)).)))))((((.....)))).......((((.((((((((((.....)))))..((((((((((((...))))))))))))))))))))).. ( -44.10) >DroGri_CAF1 53042 105 - 1 --GUA---------AUCCUUACCGUAUGAUAUUUCUGCAUGAAAUCGCGCUGUGGACUGUUUGGCGUACUGCGCCCACUCAUGGGCGGACUCUGUCUGUCCAUGGAUCGGCCGCGC --...---------.........(((.((....)))))........((((.((.((......((((.....))))...((((((((((((...)))))))))))).)).)).)))) ( -35.80) >DroWil_CAF1 68132 113 - 1 U-AGAA-AUGA-AUAAACUUACCGUAUGAUACUUUUGCAUGAAAUCCCUUUGCGGACUAUUUGGAGUACUCCUCCCGCUCAUGGGCGGACUUUGUCUGUCCAUAGAGCGCCCUCGU .-....-((((-.........(((((......((((....))))......))))).......((((.....))))(((((((((((((((...)))))))))).)))))...)))) ( -32.20) >DroMoj_CAF1 63052 103 - 1 -------------AACUCUUACCGUAUGGUAUUUCUGCAUGAAAUCGCGCUGUGGACUAUUGGGCGUACUGCGUCCGCUCAUGGGCGGACUUUGUCUGUCCAUGGAACGGCCGCGU -------------......((((....))))((((.....)))).((((((((........(((((.....)))))..((((((((((((...)))))))))))).)))).)))). ( -38.60) >DroAna_CAF1 47449 113 - 1 ACGGUACUCAUAA---ACUCACCGUGUGGUACUUCUGCAUAAAAUCCCUUUGCGGACUAUUGGGCGUACUGCGGCCACUCAUUGGAGGACUCUGCCUAUCUAUAGAACGGCCCCUG (((((........---....)))))(..((((.((((((...........))))))(....)...))))..)((((.(((....)))...((((........))))..)))).... ( -27.90) >consensus __AGUA_UCG____ACACUUACCGUAUGAUACUUCUGCAUGAAAUCCCGCUGCGGACUAUUGGGCGUACUGCGCCCACUCAUGGGCGGACUCUGUCUGUCCAUGGAACGGCCGCGU .....................((((........((((((...........))))))....((((((.....)))))).((((((((((((...)))))))))))).))))...... (-22.99 = -24.18 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:27 2006