Locus 2457

Sequence ID 2L_DroMel_CAF1
Location 6,727,180 – 6,727,292
Length 112
Max. P 0.817681
window3945

overview

Window 5

Location 6,727,180 – 6,727,292
Length 112
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 93.27
Mean single sequence MFE -39.92
Consensus MFE -37.41
Energy contribution -37.47
Covariance contribution 0.06
Combinations/Pair 1.10
Mean z-score -1.14
Structure conservation index 0.94
SVM decision value 0.67
SVM RNA-class probability 0.817681
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6727180 112 - 22407834
CUGCUCUUCCAUGUCGGGCUGCAGCUUGGCGUGCUGGGCGAGCUUCUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUUCGGAUUC
.......(((..(((((.(((((.(..((.(..(.((((((((....))))(((((((....)).)))))......)))).).....).))..)))))))))))..)))... ( -40.50)
>DroSec_CAF1 39808 112 - 1
CUGCUCCUCCAUGUCGGGCUGCAGCUUGGCGUGCUGGGCGAGCUUUUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUACGGAUUC
.......(((.((((((.(((((.(..((.(..(.((((((((....))))(((((((....)).)))))......)))).).....).))..)))))))))))).)))... ( -41.80)
>DroSim_CAF1 39997 112 - 1
CUGCUCCUCCAUGUCGGGCUGCAGCUUGGCGUGCUGGGCGAGCUUUUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUACGGAUUC
.......(((.((((((.(((((.(..((.(..(.((((((((....))))(((((((....)).)))))......)))).).....).))..)))))))))))).)))... ( -41.80)
>DroEre_CAF1 46415 112 - 1
CUGCUCCUCCAUGUCAGGCUGCAGCUUGGCGUGCUGGGCGAGCUUCUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUUCGGGUUC
..((.((..((((((((((....))))))))))..))))((((....))))(((((((....)).))))).....(((((.((((..((.(....).))..)))).))))). ( -44.40)
>DroYak_CAF1 41776 112 - 1
CUGCUCCUCCAUGUCAGGCUGCAGCUUGGCGUGCUGGGCGAGCUUCUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUUCGAAUUC
..((.((..((((((((((....))))))))))..))))((((....))))(((((((....)).)))))((((.(((.((((........))).)..)))...)))).... ( -40.70)
>DroAna_CAF1 45828 103 - 1
CUGCUCCUCCAUGUCCGGCUGAAGUUUGGCGUGCUGGGCAAGCUUCUGCUCGGAUAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCAUGCAGCUGA---------
((((....(((((((((((.((((((((.(......).)))))))).)).)))))(((....)))........))))....((........))..))))....--------- ( -30.30)
>consensus
CUGCUCCUCCAUGUCGGGCUGCAGCUUGGCGUGCUGGGCGAGCUUCUGUUCGGAGAGCUCCAGCUUCUCCUCGAUGGCCCCGAUCUUCUCCUCGUGCAGCUGAUUCGGAUUC
((((.....((((((((((....))))))))))(.((((((((....))))(((((((....)).)))))......)))).).............))))............. (-37.41 = -37.47 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:26 2006