Locus 2455

Sequence ID 2L_DroMel_CAF1
Location 6,722,697 – 6,722,790
Length 93
Max. P 0.574102
window3941

overview

Window 1

Location 6,722,697 – 6,722,790
Length 93
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 83.80
Mean single sequence MFE -25.15
Consensus MFE -15.31
Energy contribution -15.38
Covariance contribution 0.06
Combinations/Pair 1.28
Mean z-score -1.89
Structure conservation index 0.61
SVM decision value 0.08
SVM RNA-class probability 0.574102
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6722697 93 - 22407834
GAUAAGAUAUAUAUAU--GUAUAUGUGUACAAAUAAAGGCACUGGAGGCUACCACGGAUACGGAAUUGAUUUGAUGGGGGCCCUGCGCCCCGCAA
......((((((((..--..)))))))).........(((.(.((.(((..((((((((.((....))))))).)))..)))))).)))...... ( -21.90)
>DroSec_CAF1 35330 94 - 1
GAUAAGAUACAUAUAUAAAUAUAUAUGUACAGAUAAAUGUACUGGAGGCUACCACGGAUACGGAAUUGAUUUGAUGG-GGCCCUGCGCCCCGCAA
.......(((((((((....)))))))))(((((...(((((((..(....)..))).))))......)))))..((-(((.....))))).... ( -24.90)
>DroSim_CAF1 35235 94 - 1
GAUAAGAUACAUAUAUAAAUAUAUAUGUACAGAUAAAUGUACUGGAGGCUACCACGGAUACGGAAUUGAUUUGAUGG-GGCCCUGCGCCCCGCAA
.......(((((((((....)))))))))(((((...(((((((..(....)..))).))))......)))))..((-(((.....))))).... ( -24.90)
>DroEre_CAF1 41727 87 - 1
GAUAAGAUAUAUAUACA-GUAUAUAUAUACGUAUAUAGGCCCUGGAGGCCCCC-C----AUGGAAUUGAUUUGAUGGGGGCUCCGCACC--CCAA
.........(((((((.-((((....)))))))))))((...(((((..((((-(----((.(((....))).))))))))))))....--)).. ( -28.90)
>consensus
GAUAAGAUACAUAUAUA_AUAUAUAUGUACAGAUAAAGGCACUGGAGGCUACCACGGAUACGGAAUUGAUUUGAUGG_GGCCCUGCGCCCCGCAA
.......(((((((((....))))))))).........((...((.((((.((((((((.........))))).))).))))))))......... (-15.31 = -15.38 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:22 2006