Locus 2454

Sequence ID 2L_DroMel_CAF1
Location 6,716,442 – 6,716,533
Length 91
Max. P 0.781425
window3940

overview

Window 0

Location 6,716,442 – 6,716,533
Length 91
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 67.86
Mean single sequence MFE -24.65
Consensus MFE -8.70
Energy contribution -8.78
Covariance contribution 0.08
Combinations/Pair 1.27
Mean z-score -1.93
Structure conservation index 0.35
SVM decision value 0.56
SVM RNA-class probability 0.781425
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6716442 91 - 22407834
GUAUACCUGCUACUUGAAAUUAGGGGUAUACCAAUAUCGUGAGUCGUUUUGUAACACUGACGAAGGAAGUACCUU--------------AAACUGGAAUCUUACA
((((((((.(((........))))))))))).....((((.(((.(((....)))))).)))).(.(((..((..--------------.....))...))).). ( -20.50)
>DroSec_CAF1 29064 105 - 1
GUAUACCCGCUACUUGAAAUUAGGGGUAUAUCAAUACCGUGAAUCGUUUUGUAACACUGACGAAGGAAGUUCCUUAAAGGGUAUAAAUUAAAAUGGGAACUUAAA
((((((((.(((........))))))))))).....((.....(((((..........))))).))((((((((.....(((....))).....))))))))... ( -24.10)
>DroSim_CAF1 28933 105 - 1
GUAUACCCGCUACUUGAAAUUAGGGGUAUAUCAAUACGGUCAGUCGUUUUGUAACACUGGCGAAGGAAGUUCCUUAUAGAUUAAAAAUUAAAAUGGGAACUUAAA
((((((((.(((........))))))))))).......((((((.(((....))))))))).....((((((((....................))))))))... ( -27.75)
>DroEre_CAF1 30427 70 - 1
GUAUACCCGGUACUUAAAAUUAGGGGUGUACCAUUACCGUGGAGCAGUUUGUAACAC-----------------------------------CUGGGAUCUUAAA
.....(((((..((((....))))((((......))))(((..((.....))..)))-----------------------------------)))))........ ( -16.00)
>DroYak_CAF1 30663 104 - 1
GUAUACCCGGUACUUAAAAUUAG-GGUAUACCAUCAUCGUGGUGUGUUUUGCCACGCGCACGGUGGAAGCCUCCUAUCAGGUAUAUCAUAAACUGGGAUCUUAAA
.....((((((.((.......))-((((((((...(((((((((((......))))).))))))(((....))).....))))))))....))))))........ ( -34.90)
>consensus
GUAUACCCGCUACUUGAAAUUAGGGGUAUACCAAUACCGUGAAUCGUUUUGUAACACUGACGAAGGAAGUUCCUUA_____UA_A___UAAACUGGGAUCUUAAA
((((((((.(((........))))))))))).......................................................................... ( -8.70 =  -8.78 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:21 2006