| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,703,117 – 6,703,220 |
| Length | 103 |
| Max. P | 0.666041 |
| Location | 6,703,117 – 6,703,220 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 84.13 |
| Mean single sequence MFE | -35.08 |
| Consensus MFE | -29.52 |
| Energy contribution | -29.67 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6703117 103 + 22407834 UUUGGCUCUG-AGGUGUCCCAGGAAUGUGGUAACGGUCGCCGAUGCUCCAGGCACAAGCAACCACAUUGGGAUUCACAUUCGGAGCCGG-------GCCAAAACCAAAUGG ...(((((((-((((((((((...(((((((....((.(((.........))))).....))))))))))))..))).)))))))))((-------.......))...... ( -40.90) >DroSec_CAF1 16006 103 + 1 UUUGGCUCUG-AGGUGUCCCAGGAAUGUGGUAACGGUCGCCGAUGCUCCAGCCACAAGCAGCCACAUUGGGAUGCACAUUCGUAGCCGG-------GCCAAAACCAAAUGG ((((((((..-..((((((((...(((((((..(((...))).((((.........)))))))))))))))))))((....))....))-------))))))......... ( -35.00) >DroSim_CAF1 15740 103 + 1 UUUGGCUCUG-AGGUGUCCCAGGAAUGUGGUAACGGUCGCCGAUGCUCCAGCCACAAGCAGCCACAUUGGGAUUCACAUUCGGAGCCGG-------GCCAAAACCAAAUGG ...(((((((-((((((((((...(((((((..(((...))).((((.........))))))))))))))))..))).)))))))))((-------.......))...... ( -40.20) >DroEre_CAF1 16412 97 + 1 UUUAGCUCUG-AGGUGUCCCAGGAAUGUAGUAACGGUCGCCGAUGCUCC------AAGCAGCCACAUUGGGAUUCACAGUCAGAGCCGG-------GCCAAAACCAAAUGG ....((((((-(.((((((((...((((.((..(((...))).(((...------..))))).)))))))))..)))..))))))).((-------.......))...... ( -30.10) >DroYak_CAF1 16579 97 + 1 UUUGGCUCUG-AGGUGUCCCAGGAAUGUGGUAACGGUCGCCGAUGCUCC------AAGCAGCCACAUUGGGAUUCACAGUCAGAGCCGG-------GCCAAAACCAAAUGG ...(((((((-(.((((((((...(((((((..(((...))).(((...------..)))))))))))))))..)))..))))))))((-------.......))...... ( -40.60) >DroAna_CAF1 20721 105 + 1 GUUGGCUCAAAAGGUGUCUCUGGAAUGUUGUAACGGUCGCAGAUGCUCCA------GGCAGCAACAUUAAGAGUUAAAGUCCGAGUCGAAGUCACAACCAAAAGUAAACGU .(((((((......((.((((..((((((((..(((..((....)).)).------)...)))))))).)))).))......)))))))...................... ( -23.70) >consensus UUUGGCUCUG_AGGUGUCCCAGGAAUGUGGUAACGGUCGCCGAUGCUCCA_____AAGCAGCCACAUUGGGAUUCACAGUCGGAGCCGG_______GCCAAAACCAAAUGG .(((((((((...((((((((...(((((((..(((...))).((((.........))))))))))))))))..)))...)))))))))...................... (-29.52 = -29.67 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:11 2006