Locus 2446

Sequence ID 2L_DroMel_CAF1
Location 6,694,127 – 6,694,224
Length 97
Max. P 0.935666
window3925

overview

Window 5

Location 6,694,127 – 6,694,224
Length 97
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 67.01
Mean single sequence MFE -22.03
Consensus MFE -10.81
Energy contribution -10.87
Covariance contribution 0.06
Combinations/Pair 1.35
Mean z-score -1.86
Structure conservation index 0.49
SVM decision value 1.25
SVM RNA-class probability 0.935666
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6694127 97 - 22407834
AAUUCAAAUUAAUAGUCGACUGGCAGCGAUUGCCAGUCGGGCUUCGUUUAUACGAUGCGAAAUAUCAUGAUCUCAA------CAUGUGUACUUGAAAAUACCA----------
..(((((........(((((((((((...)))))))))))((.((((....)))).))...(((.((((.......------)))))))..))))).......---------- ( -26.70)
>DroPse_CAF1 17887 74 - 1
AAUUCAAAUUAAUAGUUGACUGGCAGCGAAUCCAGCUCGGGCCAUGUUUAUGCGUUGUG-CAUAUCAUGAUAUUC--------------------------------------
...............((((((((........)))).))))..((((..(((((.....)-)))).))))......-------------------------------------- ( -13.70)
>DroSec_CAF1 7127 91 - 1
AAUUCAAAUUAAUAGUCGACUGGCAGCGAUUCCCAGUCGGGCUUCGUUUAUACGAAGUGAAAUAUCAUGAUCCCAA------CAUAU------GAAAGUACUA----------
..((((.........((((((((.........))))))))(((((((....)))))))..................------....)------))).......---------- ( -21.10)
>DroSim_CAF1 7050 76 - 1
AAUUCAAAUUAAUAGUCGACUGGCAGCGAUUCCCAGUCGGGCUUCGUUUAUACGAAGUUAAAUAUCAUGAUCCCAA-------------------------------------
...(((..........(((((((.........)))))))((((((((....))))))))........)))......------------------------------------- ( -19.80)
>DroYak_CAF1 7137 112 - 1
AAUUCAAAUUAAUAGUCGACUGGCAGCGAUUCCCAGUCGGGCUUCGUUUAUGCCUGA-GAAGUAUCAUGAUCGAGAUAUCAUGAUACGUACUUCAGUCGACCCUUACUAUGUU
..............(((((((((((((((..(((....)))..))))...)))).((-(..((((((((((......))))))))))....))))))))))............ ( -37.90)
>DroPer_CAF1 16893 74 - 1
AAUUCAAAUUAAUAGUUGACUGGCAGCGAAUCCAGCUCGGGCCACGUUUACACGUUGCG-CAUAUCAUGAUAUUC--------------------------------------
...(((...........((((((........)))).))(.((.((((....)))).)).-)......))).....-------------------------------------- ( -13.00)
>consensus
AAUUCAAAUUAAUAGUCGACUGGCAGCGAUUCCCAGUCGGGCUUCGUUUAUACGAUGUGAAAUAUCAUGAUCUCAA_____________________________________
...(((.........((((((((.........))))))))((.((((....)))).)).........)))........................................... (-10.81 = -10.87 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:07 2006