Locus 2444

Sequence ID 2L_DroMel_CAF1
Location 6,689,207 – 6,689,324
Length 117
Max. P 0.958962
window3922

overview

Window 2

Location 6,689,207 – 6,689,324
Length 117
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 82.25
Mean single sequence MFE -21.65
Consensus MFE -16.14
Energy contribution -15.70
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -2.53
Structure conservation index 0.75
SVM decision value 1.50
SVM RNA-class probability 0.958962
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6689207 117 - 22407834
UGUCAAACUUACAUCGAAAUUGUCAUUUUUCAAACCGUUUUUUAAACAGAAAAAGUUUUCUUUGAAGAAAAUGGCUCAUAAAGAUA---CUCAUACAUAUGUGAGUGAACAUGUUGGCAG
((((((.(((.....((((........))))...(((((((((..(.(((((....))))).)..)))))))))......))).((---((((((....))))))))......)))))). ( -24.00)
>DroSec_CAF1 2210 98 - 1
-----------AAUCGAAAUUGUCAUUUUUCCAACCGUUUUUCAAACAGAAAAAGUUUUCUUUGAACAAAAUGGCUCAAAAAGAUA---CUCACACAUAUGUGAGUGAAC--------AA
-----------.(((......((((((((........((((((.....))))))((((.....)))))))))))).......)))(---((((((....)))))))....--------.. ( -19.62)
>DroSim_CAF1 2142 101 - 1
-----------AAUCGAAAUUGUCAUUUUUCCAACCGUUUUUCAAACAGAAAACGUUUUCUUUGAACAAAAUGGCUCAAAAAGAUACUACUCACACAUAUGUGAGUGAAC--------AA
-----------.(((......((((((((.......((((((......))))))((((.....)))))))))))).......)))..((((((((....))))))))...--------.. ( -21.32)
>consensus
___________AAUCGAAAUUGUCAUUUUUCCAACCGUUUUUCAAACAGAAAAAGUUUUCUUUGAACAAAAUGGCUCAAAAAGAUA___CUCACACAUAUGUGAGUGAAC________AA
............(((((((........))))...(((((((((((..(((((....)))))))))..)))))))........)))....((((((....))))))............... (-16.14 = -15.70 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:05 2006