Locus 2443

Sequence ID 2L_DroMel_CAF1
Location 6,677,028 – 6,677,148
Length 120
Max. P 0.612970
window3921

overview

Window 1

Location 6,677,028 – 6,677,148
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.39
Mean single sequence MFE -43.70
Consensus MFE -29.09
Energy contribution -30.98
Covariance contribution 1.90
Combinations/Pair 1.30
Mean z-score -1.81
Structure conservation index 0.67
SVM decision value 0.16
SVM RNA-class probability 0.612970
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6677028 120 - 22407834
UGAAGAAGAGCCGCAUGCAGGAGCUGCUCCAGAAGUGGAUCCAAAUGGGCUACUUCAUGGAGGUGACCGACAGAAUCUACCUAGGUCCACGUAGCCUCGUCGAGCUCAGUUUCUAUUUGA
.((((..((((((.(((.(((.((..((((((((((((.(((....)))))))))).)))))((((((...((.......)).))).)))))..)))))))).))))..))))....... ( -42.10)
>DroSec_CAF1 13092 120 - 1
UGAAGAAGAGUCGCAUGCAGGAGCUGCUCCAGAAGUGGAUCCAAAUGGGCUACUUCAUGGAGGUGGGCGAGCGAAUCUACCUGGGCCCACGCAGCCUCGUCGAGCUCAGUUUCUAUUUGA
.((((..((((((.(((..((.((((((((((((((((.(((....)))))))))).)))).((((((................))))))))))))))))))).)))..))))....... ( -47.09)
>DroEre_CAF1 13383 120 - 1
UGAAGAAGAGCCGCAUGCAGGAGCUGCUCCAGAAGUGGACCCAAAUGGGCUACUUCAUGGAGGUGGACGAGAGAAUCUACCUGGGUCCACGCAGCCUCGUCGAGCUCAGUUUCUACUUGG
.((((..((((((.(((..((.((((((((((((((((.(((....)))))))))).)))).((((((...((.......))..)))))))))))))))))).))))..))))....... ( -49.90)
>DroYak_CAF1 12964 120 - 1
UGAAGAAGAGCCGCAUGCAGGAGCUGCUCCAGAAGUGGACCCAGAUGGGCUAUUUCAUGGAGGUGGACGAGAGAAUCUACCUGGGCCCACGCAGCCUCGUCGAGCUCAGCUUCUACUUGA
.((((..((((((.(((..((.((((((((((((((((.(((....)))))))))).))))(((((((....)..)))))).........)))))))))))).))))..))))....... ( -48.60)
>DroMoj_CAF1 17428 120 - 1
CCAAGAAGCUGCGCAUGCAAACGCUGCUCCAACUAUGGACCGAAAUGGGUUACUUCUUGGAGUCGGGCGACAGACUCUAUCUGGGUCCACGCAGCAUCGUCGAGUUCGAGUUUUAUUUGC
....((.((((((........(((((((((((.....((((......)))).....)))))))..))))...(((((.....)))))..)))))).)).(((....)))........... ( -39.50)
>DroAna_CAF1 13188 120 - 1
UAAAGAAGAGUCGCAUGCAGCAACUGCUCCAGAAAUGGUGCAAUAUGGGGUAUUUUCAGGAGAUCGACGAGAGCAUCUACCUCGGGCCGCGCAGCCUCGUUGAACUCAGCUUUUACCUGA
........(((.((.....)).)))((.(((....))).))......(((((.......(((.((((((((.((.....(....)((...)).)))))))))).)))......))))).. ( -35.02)
>consensus
UGAAGAAGAGCCGCAUGCAGGAGCUGCUCCAGAAGUGGACCCAAAUGGGCUACUUCAUGGAGGUGGACGAGAGAAUCUACCUGGGUCCACGCAGCCUCGUCGAGCUCAGUUUCUACUUGA
.((((..((((((.(((.((..((((((((((((((((.(((....)))))))))).))))((((((........)))))).........)))))))))))).))))..))))....... (-29.09 = -30.98 +   1.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:04 2006