Locus 2442

Sequence ID 2L_DroMel_CAF1
Location 6,675,753 – 6,675,849
Length 96
Max. P 0.581656
window3920

overview

Window 0

Location 6,675,753 – 6,675,849
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 81.93
Mean single sequence MFE -31.45
Consensus MFE -25.91
Energy contribution -25.38
Covariance contribution -0.52
Combinations/Pair 1.25
Mean z-score -1.31
Structure conservation index 0.82
SVM decision value 0.10
SVM RNA-class probability 0.581656
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6675753 96 + 22407834
UUAUACCUGGAUAGUUUCUAUCCAUGCAGCCGAUUGCCAGGUGCUUGCCAUCCGGCGAGUACUUGAGGGAAGUGGGCGACUCGACGCUGAAGACCA
.......(((((((...))))))).((((....))))((((((((((((....)))))))))))).((....(.((((......)))).)...)). ( -35.50)
>DroPse_CAF1 11449 89 + 1
-------UGGAUAGGUUCCAUCCAUGCAGCCAAUGGCGAGGUAUUUGCCAUCGGGCGAAUAUUUAAGCGAAGUCGGUGACUCCACACUGAAAAUCA
-------(((((.(....)))))).((.(((...))).(((((((((((....)))))))))))..))((..((((((......))))))...)). ( -29.20)
>DroSec_CAF1 11803 96 + 1
CUAUACCUGGAUAGUUUCUAUCCAUGCAGCCGAUGGCCAGCUGCUUGCCAUCCGGCGAGUACUGGAGGGAAGUGGGCGACUCGACGCUGAAGACCA
.......(((((((...)))))))............((((.((((((((....)))))))))))).((....(.((((......)))).)...)). ( -32.90)
>DroSim_CAF1 14363 96 + 1
CUAUACCUGGAUAGUUUCUAUCCAUGCAGCCGAUGGCCAGGUGCUUGCCAUCCGGCGAGUACUUAAGGGAAGUGGGCGACUCGACGCUGAAGACCA
.......(((((((...)))))))....(((.((..((.((((((((((....))))))))))....))..)).)))................... ( -33.70)
>DroYak_CAF1 11680 96 + 1
CUAUACCUGGGUAGUCUCUAUCCAUGCAGCCGAUGGCCAGCUGUUUGCCGUCCGGCGAAAACUUGAGGGACGUGGGGAACUCGACGCUAAAGACCA
.........(((.((((((.........(((((((((.........))))).)))).........))))))(((..(....)..))).....))). ( -28.17)
>DroPer_CAF1 15968 89 + 1
-------UGGAUAGGUGCCAUCCAUGCAGCCAAUGGCGAGGUAUUUGCCAUCGGGCGAAUAUUUAAGCGAAGUCGGUGACUCCACACUGAAAAUCA
-------(((((.(....)))))).((.(((...))).(((((((((((....)))))))))))..))((..((((((......))))))...)). ( -29.20)
>consensus
CUAUACCUGGAUAGUUUCUAUCCAUGCAGCCGAUGGCCAGGUGCUUGCCAUCCGGCGAAUACUUAAGGGAAGUGGGCGACUCGACGCUGAAGACCA
.......(((((((...)))))))....(((.((..((.((((((((((....))))))))))....))..)).)))................... (-25.91 = -25.38 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:03 2006