Locus 2440

Sequence ID 2L_DroMel_CAF1
Location 6,670,043 – 6,670,140
Length 97
Max. P 0.857110
window3918

overview

Window 8

Location 6,670,043 – 6,670,140
Length 97
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 79.46
Mean single sequence MFE -31.08
Consensus MFE -19.56
Energy contribution -20.03
Covariance contribution 0.47
Combinations/Pair 1.21
Mean z-score -1.98
Structure conservation index 0.63
SVM decision value 0.81
SVM RNA-class probability 0.857110
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6670043 97 + 22407834
AGCGCAUGCCAAUGUGAUAAUGCGAAACGCCGUAAUGAAGCGAAAAAUUGAGGAGCAGACCUCGAAGCUUAUCAAUGGCGGUGC------------CAAGCAUCAGGCA
.((((.(((((...((((((.((....(((.........))).....((((((......)))))).)))))))).)))))))))------------...((.....)). ( -30.50)
>DroPse_CAF1 5866 109 + 1
GGCCCAUGCCAAUCUAAUAAUGAGAAAUGCUGUAAUGAAGCGUAAAAUGGAGGAGCAGUCCUCCAUGCUGAUCAAUGGUGGUGCUGUUGUUGGAGUCAAGAAUCCGGCA
(((((..((((...............(((((.......)))))...((((((((....)))))))).........)))))).)))..(((((((........))))))) ( -32.60)
>DroSec_CAF1 6127 97 + 1
AGCGCAUGCCAAUGUGAUAAUGCGAAACGCCGUAAUGAAGCGAAAAAUGGAGGAGCAGACCUCAAAGCUUAUCAAUGGCGGUGC------------CAAGCAUCAGGCC
.((((.(((((...((((((.((....(((.........))).......((((......))))...)))))))).)))))))))------------...((.....)). ( -28.00)
>DroYak_CAF1 6053 97 + 1
AGCGCAUGCCAAUGUGAUAAUGCGAAACGCUGUAAUGAAGCGAAAAAUGGAGGAGCAGACCUCCAAGCUCAUUAAUGGCGGUGC------------CAAGCAUCAGACG
.((((.(((((..((((....((....((((.......)))).....((((((......)))))).))))))...)))))))))------------............. ( -30.80)
>DroAna_CAF1 6528 97 + 1
GGCCCAUGCGAAUGUUAUUAUGCGGAAUGCUGUGAUGAAGCGCAAACUGGAGGAGCAGACCUCCAAACUGAUCAGCGCCGGGGC------------CAAGAAUCUUCAA
(((((.((((....(((((((((.....)).)))))))..))))...((((((......))))))...............))))------------)............ ( -32.00)
>DroPer_CAF1 10381 109 + 1
GGCCCAUGCCAAUCUAAUAAUGAGAAAUGCUGUAAUGAAGCGUAAAAUGGAGGAGCAGUCCUCCAUGCUGAUCAAUGGUGGUGCUGUUGUUGGAGUCAAGAAUCCGGCA
(((((..((((...............(((((.......)))))...((((((((....)))))))).........)))))).)))..(((((((........))))))) ( -32.60)
>consensus
AGCCCAUGCCAAUGUGAUAAUGCGAAACGCUGUAAUGAAGCGAAAAAUGGAGGAGCAGACCUCCAAGCUGAUCAAUGGCGGUGC____________CAAGAAUCAGGCA
.((((.(((((................((((.......)))).....((((((......))))))..........)))))))))......................... (-19.56 = -20.03 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:01 2006