| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,661,657 – 6,661,756 |
| Length | 99 |
| Max. P | 0.622592 |
| Location | 6,661,657 – 6,661,756 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 82.54 |
| Mean single sequence MFE | -38.28 |
| Consensus MFE | -26.25 |
| Energy contribution | -27.70 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6661657 99 + 22407834 UGGAUUCAGGGCAAGCGGGAGGCGGCCCGCUCGAACAGUUGAGGUAGCAGCGAACCCGCAGCUGCUGGCUCAGUUGCCCAACCAAAGAGUUAGCUCCAC-- ((((....(((((((((((......)))))........(((((.(((((((.........))))))).)))))))))))(((......)))...)))).-- ( -41.50) >DroVir_CAF1 6490 93 + 1 UGGAUCGAGGGCAAACGCAGUGCGGCGCGUGUCAAGAGCUGAGCAACCA---AACCCG-----GCUAGGACACGCGCAUAACCAAAGAAUUAGCUCGUCGU .....(((((((...(((...)))(((((((((...(((((.(......---..).))-----)))..)))))))))...............)))).))). ( -35.60) >DroSec_CAF1 5017 99 + 1 UGGAUUCAGGGCAAGCGGGAUGCGGCCCGCUCGAACAGUUGAGGUAGCAGCGGACCCGCAGCUGCAGGCUCAUUUGCCCAACCAAAGAGUUAGCUCCAU-- ((((....(((((((((((......)))))......((((...(((((.(((....))).))))).))))...))))))(((......)))...)))).-- ( -38.00) >DroSim_CAF1 5021 99 + 1 UGGAUUCAGGGCAAGCGGGAUGCGGCCCGCUCGAACAGUUGAGGUAGCAGCGGACCCGCAGCUGCAGGCUCAGUUGCCCAACCAAAGAGUUAGCUCCAC-- ((((....(((((((((((......)))))........((((((((((.(((....))).)))))...)))))))))))(((......)))...)))).-- ( -38.40) >DroEre_CAF1 5022 99 + 1 UGGAUUGAGGGCAAGCGGGAGGCGGCCCGCUCAAAGAGUAAAGGUAGCAGUGAACCCGCAGCUGCAGGCUCAGUUGCCCAACCAAAGAGUUAGCUCCAC-- ((((....(((((((((((......))))).....((((....(((((.(((....))).)))))..))))..))))))(((......)))...)))).-- ( -38.20) >DroYak_CAF1 5119 99 + 1 UGGAUUGAGGGCAAGCGGGAGGCGGCCCGCUCGAAGAGUUGAGAGAGCAGCGAAACCGCAGCUGCCGGCUCAGUUGCCCAACCAAAGAGUUAGCUCCAC-- ((((....((((((..(((.((((((..((((............)))).(((....))).))))))..)))..))))))(((......)))...)))).-- ( -38.00) >consensus UGGAUUCAGGGCAAGCGGGAGGCGGCCCGCUCGAACAGUUGAGGUAGCAGCGAACCCGCAGCUGCAGGCUCAGUUGCCCAACCAAAGAGUUAGCUCCAC__ (((.....(((((((((((......))))).........((((.(.(((((.........))))).).)))).))))))..)))..(((....)))..... (-26.25 = -27.70 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:00 2006