Locus 2437

Sequence ID 2L_DroMel_CAF1
Location 6,653,651 – 6,653,771
Length 120
Max. P 0.666801
window3915

overview

Window 5

Location 6,653,651 – 6,653,771
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.28
Mean single sequence MFE -54.23
Consensus MFE -31.67
Energy contribution -31.83
Covariance contribution 0.17
Combinations/Pair 1.38
Mean z-score -1.77
Structure conservation index 0.58
SVM decision value 0.28
SVM RNA-class probability 0.666801
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6653651 120 + 22407834
UCAGAUGGGCACGCUGGAGAACCGAGCUCAUGAGUCCUGGCUGGCAGCGCGCCAGUCGGAGCGCCGUUGCGAAGAAGCGUUGGCCGAAGCUGCCAGCCUGAGGCGUAAGCUGACCACAAU
((((((((((.((.(.....).)).))))))..((((.((((((((((((.((....)).))((((.(((......))).))))....)))))))))).).))).....))))....... ( -52.10)
>DroVir_CAF1 27731 120 + 1
ACAGAUGGGCACGCUGGAAAAUCGUGCGCACGAAUCCUGGCUGGCGGCGCGUCAGUCCGAGCGUCGCUGCGAGGAGGCGCAGGCCGAAGCCGCCGGCCUGCGGCGCAAGCUAACGGCCAU
.....((.(((((.(.....).))))).))....((((.((.((((((((.((.....)))))))))))).))))(((((((((((.......))))))))(((....)))....))).. ( -62.50)
>DroGri_CAF1 25985 120 + 1
ACAGAUGGGCACGCUGGAGAAUCGUGCACACGAAUCGUGGCUGGCGGCGCGUCAAUCGGAACGUCGCAGCGAGGAGGCUCAGGCAGAAGCCGCCGGUUUGCGGCGCAAGCUGACUGCGAU
...((((.((.(((..(.((.((((....)))).))....)..))))).)))).........(((((((((((..(((...(((....))))))..))))((((....)))).))))))) ( -51.30)
>DroWil_CAF1 28829 120 + 1
CCAAAUGGGCACAUUAGAGAAUCGUGCUCAUGAAUCGUGGCUGGCUGCUCGUCAAUCGGAGCGCCGCUGCGAAGAAGCAUUGGCUGAGGCAGCCGGUUUGCGUCGCAAACUCACGGCCAU
....(((((((((((....))).)))))))).....(((((((((((((((.....))....((((.(((......))).))))...)))))))(((((((...)))))))...)))))) ( -47.40)
>DroMoj_CAF1 28011 120 + 1
GCAGAUGGGCACGCUGGAGAAUCGUGCACACGAAUCGUGGCUGGCGGCGCGCCAGGCCGAUCGGCGACGGGAGGAGGCGCAGGCUGAAGCCGCCGGCUAUCGGCGACAGAUGACAGCCAU
.......(((.(((((..((.((((....)))).))(((((((((((((((((...((..(((....)))..)).)))))........))))))))))))))))).(....)...))).. ( -55.40)
>DroAna_CAF1 18388 120 + 1
ACAGAUGGGAACGCUCGAAAAUCGGGCCCAUGAGUCCUGGCUGGCGGCACGUCAGUCGGAGCGCCGGUGCGAAGAGGCACUGGCUGAAGCCGCCGGGCUGCGGCGCAAGCUGACUACCAU
....((((....(((((.....))))).....((((((((((((((...))))))))))(((((((((((......))))))))....(((((......)))))....))))))).)))) ( -56.70)
>consensus
ACAGAUGGGCACGCUGGAGAAUCGUGCACACGAAUCCUGGCUGGCGGCGCGUCAGUCGGAGCGCCGCUGCGAAGAGGCGCAGGCUGAAGCCGCCGGCCUGCGGCGCAAGCUGACGGCCAU
.....((.(((((.(.....).))))).))........((((((((((..((........))(((..(((......)))..)))....))))))))))...(((....)))......... (-31.67 = -31.83 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:58 2006