Locus 2435

Sequence ID 2L_DroMel_CAF1
Location 6,650,175 – 6,650,270
Length 95
Max. P 0.511221
window3913

overview

Window 3

Location 6,650,175 – 6,650,270
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 84.44
Mean single sequence MFE -39.05
Consensus MFE -24.40
Energy contribution -26.27
Covariance contribution 1.87
Combinations/Pair 1.14
Mean z-score -2.75
Structure conservation index 0.62
SVM decision value -0.04
SVM RNA-class probability 0.511221
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6650175 95 - 22407834
GCAAUGGCCUCCAGGGGAAGCUCAGUUCCUUCUAUAACCUGCACUUGGGCCUUGGAAGCCGCAGUAGGA---UCAGGAACCUGCUGAUCCUGCAGCUU
.....(((.(((((((((((........)))).....(((......)))))))))).)))((.((((((---((((.......)))))))))).)).. ( -39.60)
>DroPse_CAF1 18942 95 - 1
GGAAUUGCCUCCAUUGGCAGCUGAGUGCCGUCUACCAUCUGCA---GGACUUGAGAUGACGCGGUUGGAACAUCGGGUACCUGUUGGUCAUCCACCUC
(((..((((......))))((.....)).....((((...(((---((((((((..(..((....))..)..)))))).)))))))))..)))..... ( -25.70)
>DroSec_CAF1 15241 95 - 1
GCAAUGGCCUCCAGGGGAAGCUCAGUUCCUUCUAUAACCUGCACUUGGGUCUUGGACGCCGCAGUAGGA---UCAGGAACCUGCUGAUCCUGCAGCUU
.....(((.(((((((((((........)))))...((((......)))))))))).)))((.((((((---((((.......)))))))))).)).. ( -38.90)
>DroSim_CAF1 15361 95 - 1
GCAAUGGCCUCCAGGGGAAGCUCAGUUCCUUCUAUAACCUGCACUUGGGCCUUGGAAGCCGCAGUAGGA---UCAGGAACCUGCUGAUCCUGCAGGUU
((...(((.(((((((((((........)))).....(((......)))))))))).))))).((((((---((((.......))))))))))..... ( -37.90)
>DroEre_CAF1 16180 95 - 1
GGAAUGGCUUCCAGGGGAAGCUCAGUGCCUUCUACAACCUGCACUUGGGCUUUGGAAGCCGCCGUAGGA---UCUGGAACCUGCUGAUCCUGCAGCUU
.....((((((((....(((((((((((............)))).)))))))))))))))((.((((((---((.((......)))))))))).)).. ( -41.70)
>DroYak_CAF1 15952 95 - 1
GGAAUGGCUUCCAGGGGAAGCUCAGUGCCAUCAAUAACCUGCACUGGGGCCUUGGAAGCCGCCGUAGGA---UCAGGAACCUGCUGAUCCUGCAGCUU
.....(((((((((((....((((((((............)))))))).)))))))))))((.((((((---((((.......)))))))))).)).. ( -50.50)
>consensus
GCAAUGGCCUCCAGGGGAAGCUCAGUGCCUUCUAUAACCUGCACUUGGGCCUUGGAAGCCGCAGUAGGA___UCAGGAACCUGCUGAUCCUGCAGCUU
.....(((.(((((((((((........)))).....(((......)))))))))).)))((.((((((....(((....)))....)))))).)).. (-24.40 = -26.27 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:55 2006