Locus 2434

Sequence ID 2L_DroMel_CAF1
Location 6,648,097 – 6,648,200
Length 103
Max. P 0.912450
window3912

overview

Window 2

Location 6,648,097 – 6,648,200
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 94.94
Mean single sequence MFE -29.54
Consensus MFE -25.72
Energy contribution -26.08
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.57
Structure conservation index 0.87
SVM decision value 1.08
SVM RNA-class probability 0.912450
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6648097 103 - 22407834
CUGGCAACACCGCCCGUUGGACACAGCAUGAAAAUGCGCAACUCAGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUCG
(..(((((((((..(((((....)))).((((((((((......((.........))......))))))))))..........)..))).))))))..).... ( -29.40)
>DroSec_CAF1 13172 103 - 1
CUGGCAACACCGGCCGUUGGACACAGCAUGAAAAUGCGCAACUCAGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUCG
(..(((((((((..(((((....)))).((((((((((......((.........))......))))))))))..........)..))).))))))..).... ( -32.00)
>DroSim_CAF1 13227 103 - 1
CUGGCAACACCGGCCGUUGGACACAGCAUGAAAAUGCGCAACUCAGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUCG
(..(((((((((..(((((....)))).((((((((((......((.........))......))))))))))..........)..))).))))))..).... ( -32.00)
>DroEre_CAF1 13808 101 - 1
CUGGCAACACCGCUCAUCGGC--CAGCAUGAAAAUGCGCAACUCGGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUAG
(..(((((((((.((((.(((--.....((((((((((......((.........))......))))))))))..)))...)))).))).))))))..).... ( -29.70)
>DroYak_CAF1 13646 101 - 1
GUGGCAACACCGCUCGUUGGC--CAGCAUGAAAAUGCGCAACUCGGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUCG
(((....)))........(((--(((((((((((((((......((.........))......)))))))))).((((.....)).)).....)))).)))). ( -24.60)
>consensus
CUGGCAACACCGCCCGUUGGACACAGCAUGAAAAUGCGCAACUCAGUUUCUAUUUCUAUCUUUCGCAUUUUCAACGUCUUUGUGAUCGGUUGUUGUUGGGUCG
(..(((((((((..(((((....)))).((((((((((......((.........))......))))))))))..........)..))).))))))..).... (-25.72 = -26.08 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:54 2006