Locus 2430

Sequence ID	2L_DroMel_CAF1
Location	6,625,253 – 6,625,356
Length	103
Max. P	0.851280

overview

Window 8

Location	6,625,253 – 6,625,356
Length	103
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	90.37
Mean single sequence MFE	-22.47
Consensus MFE	-19.29
Energy contribution	-19.23
Covariance contribution	-0.06
Combinations/Pair	1.11
Mean z-score	-1.79
Structure conservation index	0.86
SVM decision value	0.79
SVM RNA-class probability	0.851280
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6625253 103 + 22407834
AAAGUUAAAAUACUUCUUAGGUUCAUAGCUAAU------------CGAAUAAAAAUGCUAGCCAGCUUAUGAUGAGCCACAAUAUGAGCCAAAUGGCUGGCUGGAUCAUUAUAAU
..(((((....(((.....)))...)))))...------------........((((((((((((((.....((.((((.....)).))))...))))))))))..))))..... ( -23.40)
>DroSec_CAF1 9396 103 + 1
AAAGUUAAAAUAUCUCUUAGGUUCAUAGCUAAU------------CGAAUAAAAAUGCUAGCCAGCUUAUGAUGAGCCACAAUAUGAGCCAAAUGACUGGCUGGGUCAUUAUAAU
...................(((...((((....------------...........)))))))...(((((((((.((.(.....)(((((......))))))).))))))))). ( -22.56)
>DroSim_CAF1 9649 103 + 1
AAAGUUAAAAUACUUCUUAGGUUCAUAGCUAAU------------CGAAUAAAAAUGCUAGCCAGCUUAUGAUGAGCCACAAUAUGAGCCAAAUGACUGGCUGGGUCAUUAUAAC
.((((......))))....(((...((((....------------...........)))))))...(((((((((.((.(.....)(((((......))))))).))))))))). ( -22.96)
>DroYak_CAF1 10045 115 + 1
AAAGAUAAAAUACUUCUUAAGUUCAUAGCUAAUAAAUAAAAAAUGCGAAUAAAAAUGCUAGCCAGCUUAUGAUGAGCCACAAUAUGAGCCAACUGACUGGCUGGGUCUUUAUAAU
((((((..............((((...((...............)))))).......((((((((.(((.(.((.((((.....)).)))).))))))))))))))))))..... ( -20.96)
>consensus
AAAGUUAAAAUACUUCUUAGGUUCAUAGCUAAU____________CGAAUAAAAAUGCUAGCCAGCUUAUGAUGAGCCACAAUAUGAGCCAAAUGACUGGCUGGGUCAUUAUAAU
..(((((....(((.....)))...)))))..........................(((....)))(((((((((.((.(.....)(((((......))))))).))))))))). (-19.29 = -19.23 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:50 2006