Locus 2428

Sequence ID 2L_DroMel_CAF1
Location 6,615,132 – 6,615,231
Length 99
Max. P 0.613914
window3906

overview

Window 6

Location 6,615,132 – 6,615,231
Length 99
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.66
Mean single sequence MFE -22.33
Consensus MFE -15.96
Energy contribution -15.85
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.94
Structure conservation index 0.71
SVM decision value 0.16
SVM RNA-class probability 0.613914
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6615132 99 - 22407834
GCUUUGCUUUUUCUAUGAGCUCACACUGCAGUUAUUAUUAUUGGUAUAUAUAAGUUCAUAUUA---------------------ACUUUAUUAGUAAUAAAGCUAUAAAGAGAAUGUGAG
...(..(.((((((....((.......))((((.((((((((((((.....(((((......)---------------------))))))))))))))))))))....)))))).)..). ( -18.10)
>DroSec_CAF1 42239 120 - 1
GCUUUGCUUUUUCUAUGAGCUCACACUGCAGUUAUUGUUAUUGGUAUAUAUAAGUUCAUAUUAUGAACUUAUACCAAUAAUUAUACUUUAUUAGUAAUAAAGUUAUAUAGAGAAUGUGAG
...(..(.(((((((((((((...((((.(((....((((((((((((....(((((((...)))))))))))))))))))...)))....)))).....)))).))))))))).)..). ( -31.10)
>DroSim_CAF1 43494 99 - 1
GCUUUGCUUUUUCUAUGAGCUCACACUGCAGUUAUUAUUAUUGGUAUAUAUAAGUUCAUAUUA---------------------AUUUUAUUAGUAAUAAAGUUAUAUGGAGAAUGUGAG
...(..(.(((((((((.((.......)).....((((((((((((....(((.......)))---------------------....)))))))))))).....))))))))).)..). ( -17.80)
>consensus
GCUUUGCUUUUUCUAUGAGCUCACACUGCAGUUAUUAUUAUUGGUAUAUAUAAGUUCAUAUUA_____________________ACUUUAUUAGUAAUAAAGUUAUAUAGAGAAUGUGAG
...(..(.(((((((((.((.......)).....((((((((((((..........................................)))))))))))).....))))))))).)..). (-15.96 = -15.85 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:49 2006