Locus 2427

Sequence ID 2L_DroMel_CAF1
Location 6,614,571 – 6,614,691
Length 120
Max. P 0.976093
window3905

overview

Window 5

Location 6,614,571 – 6,614,691
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.10
Mean single sequence MFE -35.03
Consensus MFE -34.57
Energy contribution -34.90
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.45
Structure conservation index 0.99
SVM decision value 1.76
SVM RNA-class probability 0.976093
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6614571 120 - 22407834
GAUUCGUUGUGGCUUAUUCAAGUUCCUCGCCCGCCUUACGUCAAUGCUGACGAUACAAUAUUGUUCAUGGGGCUCGAGCUGAAAAUUCACAGCGAAUCCAAAACAUUUAGGGGGAAAAAA
(((((((((((..((.((((.((((...((((......(((((....)))))..(((....))).....))))..))))))))))..)))))))))))...................... ( -35.80)
>DroSec_CAF1 41674 119 - 1
GAUUCGUUGUGGCUUAUUCAAGUUCCUCGCCCGCCUUACGUCAAUGCUGACGAUACAUUAUUGUUCCCGGGGCUCGAGCUGAAAAUUCAGAGCGAAUCCAAAACAUUUAGGA-AAAAAAA
((((((((.((..((.((((.((((...((((......(((((....)))))..(((....))).....))))..))))))))))..)).))))))))..............-....... ( -32.70)
>DroSim_CAF1 42924 119 - 1
GAUUCGUUGUGGCUUAUUCAAGUUCCUCGCCCGCCUUACGUCAAUGCUGACGAUACAUUAUUGUUCACGGGGCUCGAGCUGAAAAUUCACAGCGAAUCCAAAACAUUUAGGA-AAAAAAA
(((((((((((..((.((((.((((...((((......(((((....)))))..(((....))).....))))..))))))))))..)))))))))))..............-....... ( -36.60)
>consensus
GAUUCGUUGUGGCUUAUUCAAGUUCCUCGCCCGCCUUACGUCAAUGCUGACGAUACAUUAUUGUUCACGGGGCUCGAGCUGAAAAUUCACAGCGAAUCCAAAACAUUUAGGA_AAAAAAA
(((((((((((..((.((((.((((...((((......(((((....)))))..(((....))).....))))..))))))))))..)))))))))))...................... (-34.57 = -34.90 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:48 2006