Locus 2426

Sequence ID 2L_DroMel_CAF1
Location 6,614,337 – 6,614,456
Length 119
Max. P 0.868701
window3904

overview

Window 4

Location 6,614,337 – 6,614,456
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.35
Mean single sequence MFE -37.63
Consensus MFE -31.77
Energy contribution -32.77
Covariance contribution 1.00
Combinations/Pair 1.03
Mean z-score -2.17
Structure conservation index 0.84
SVM decision value 0.86
SVM RNA-class probability 0.868701
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6614337 119 + 22407834
ACAAAAUGACGAAAAUCCCCUG-GCACGGGGCUUGAUUUCCUAUCGACAAGCUGCAGAAAGUGAAUCGUUUUGUAAUUUGAGCAGCUGCCCCGUCGUCGUCCAUGGGUGAAAAUGUCACU
......(((((....(((((((-((((((((((((((.....)))))..((((((...((((.............))))..)))))))))))))....).))).))).))...))))).. ( -37.22)
>DroSec_CAF1 41449 111 + 1
ACAAAAUGACGAGAAUCCCCUG-GCACGGGGCUUGAUUUCCUAUCGACAAGCUGCAGAAAGUGAAUCGUUUUGUAAUUCGAGCAGCUGCCCCGU---CGUCCAUGGGUGAAAAUG-----
...............(((((((-((((((((((((((.....)))))..((((((.(((.(..((....))..)..)))..)))))))))))))---.).))).))).)).....----- ( -37.60)
>DroSim_CAF1 42690 116 + 1
ACAAAAUGACGAAAAUCCCCUG-GCACGGGGCUUGAUUUCCUAUCGACAAGCUGCAGAAAGUGAAUCGUUUUGUAAUUCGAGCAGCUGCCCCGU---CGUCCAUGGGUGAAAAUGUCACU
......(((((....(((((((-((((((((((((((.....)))))..((((((.(((.(..((....))..)..)))..)))))))))))))---.).))).))).))...))))).. ( -41.30)
>DroYak_CAF1 43320 117 + 1
ACAAAAUGACGAAAAUCCCCCGAGCACGGGGCUUGAUUUCCUAUCGACAAGCUGCAGAAAGUGAAUCGUUUUGUAAUUUGAGCAGCUGCCCCGU---CGUCCAUCGGUGAAAAUGUCACU
......(((((....((..((((((((((((((((((.....)))))..((((((...((((.............))))..)))))))))))))---.))...)))).))...))))).. ( -34.42)
>consensus
ACAAAAUGACGAAAAUCCCCUG_GCACGGGGCUUGAUUUCCUAUCGACAAGCUGCAGAAAGUGAAUCGUUUUGUAAUUCGAGCAGCUGCCCCGU___CGUCCAUGGGUGAAAAUGUCACU
......(((((.....(((.((.((((((((((((((.....)))))..((((((.(((.(..((....))..)..)))..)))))))))))))....)).)).)))......))))).. (-31.77 = -32.77 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:47 2006