Locus 2424

Sequence ID 2L_DroMel_CAF1
Location 6,613,831 – 6,613,951
Length 120
Max. P 0.968196
window3901

overview

Window 1

Location 6,613,831 – 6,613,951
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.98
Mean single sequence MFE -27.00
Consensus MFE -21.69
Energy contribution -24.50
Covariance contribution 2.81
Combinations/Pair 1.03
Mean z-score -2.64
Structure conservation index 0.80
SVM decision value 1.62
SVM RNA-class probability 0.968196
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6613831 120 - 22407834
AUAGAAAAGUGAAAAACGAAAAACGAAAGAGUGCAGGCGAAACAGAAUUGAUUAUACAAAACGUAAAUAAAUACAUCUUUGCGUUCUAUUUGCGUUGGCUUGCGUUCUUUUGUUUAUUUU
....................((((((((((((((((((.........(((......)))((((((((((((..((....))..)).)))))))))).))))))))))))))))))..... ( -32.00)
>DroSec_CAF1 40976 106 - 1
AUAGAAAAGCGAA-------AAACGAAAGAGUGCAGGCGAAACAGAAUUGAUUAUACAAAACGUAAAUAAAUACAUCUUUGCA-------AGCGUUGGCUUGCGUUCUUUUGUUUAUUUU
.............-------((((((((((((((((((..(((....(((......)))...(((((..........))))).-------...))).))))))))))))))))))..... ( -25.10)
>DroSim_CAF1 42172 113 - 1
AUAGAAAAGUGAA-------AAACGAAAGAGUGCAGGCGAAACAGAAUUGAUUAUACAAAACGUAAAUAAAUACAUCUUUGCGUUCUAUUUGCGUUGGCUUGCGUUCUUUUGUUUAUUUU
.............-------((((((((((((((((((.........(((......)))((((((((((((..((....))..)).)))))))))).))))))))))))))))))..... ( -32.00)
>DroYak_CAF1 42801 112 - 1
AUAAAAAACAGAA-------AAAC-AAAGAGUGCAGGCGAAAAAGAAUUGAUUAUACAAAACGUAAAUAAAUACAUCUUCGCGUUCUAUUUGCGUUGGAUUUCGUACUUUUGUUUAUUUU
.............-------((((-((.((((((.............(((......)))((((((((((...((........))..)))))))))).......))))))))))))..... ( -18.90)
>consensus
AUAGAAAAGUGAA_______AAACGAAAGAGUGCAGGCGAAACAGAAUUGAUUAUACAAAACGUAAAUAAAUACAUCUUUGCGUUCUAUUUGCGUUGGCUUGCGUUCUUUUGUUUAUUUU
....................((((((((((((((((((.........(((......)))(((((((((((((.((....)).))).)))))))))).))))))))))))))))))..... (-21.69 = -24.50 +   2.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:43 2006