Locus 242

Sequence ID 2L_DroMel_CAF1
Location 714,182 – 714,281
Length 99
Max. P 0.792496
window387

overview

Window 7

Location 714,182 – 714,281
Length 99
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 88.60
Mean single sequence MFE -19.17
Consensus MFE -15.40
Energy contribution -14.96
Covariance contribution -0.44
Combinations/Pair 1.31
Mean z-score -1.69
Structure conservation index 0.80
SVM decision value 0.59
SVM RNA-class probability 0.792496
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 714182 99 + 22407834
U-CCUUCAAAUUAUAA-CUGUCUUUCCUGAUUGACUGACUGUUCCUCUAAAGUGUUGGUUGAAUUUUGGGGUGGACUUUUCAUCUUUCUCUUACACUUCGU
.-..............-..((((.(((..((..((..((..............))..))..)...)..))).))))......................... ( -16.24)
>DroSec_CAF1 92932 93 + 1
U-CCUUCAAAUUAUAA-CUGUCUUUCCUGAC------AUUGUCCCCCUAAAGUGUUGGUUGAAUUUUGGGGUGGACUUUUCAUCUUUCUCUUACAUUUCGU
.-..............-.((((......)))------)..(((((((((((((.........))))))))).))))......................... ( -20.60)
>DroSim_CAF1 98109 93 + 1
U-CCUUCAAAUUAUAA-CUGUCUUUCCUGAC------AUUGUCCCCCUAAAGUGUUGGUUGAAUUUUGGGGUGGACUUUUCAUCUUUCUCUUACACUUCGU
.-..............-.((((......)))------)..(((((((((((((.........))))))))).))))......................... ( -20.60)
>DroEre_CAF1 102694 94 + 1
UCCCCUGAAAUUAUACUCGGUCUUUCCUGAC------AUUGUCCCCCC-AAGUGUUGGUUGAAUUUUGGGGUGGACUUUUCAUCUUUAUCUUACACUUCGU
.....(((((.........(((......)))------...((((((((-(((............))))))).)))).)))))................... ( -21.60)
>DroYak_CAF1 98707 94 + 1
UCCCUUCAAAUUAGAG-CUGUCUUUCCUGAA------UUUGUUUCCCUAAAGUGUUGGUUGGAUUUUGGGGUGGACUUUUCAUCUUUCGCUUACACUUCGU
.............(((-(.(.......((((------...(((((((((((((.(.....).))))))))).))))..)))).....)))))......... ( -16.80)
>consensus
U_CCUUCAAAUUAUAA_CUGUCUUUCCUGAC______AUUGUCCCCCUAAAGUGUUGGUUGAAUUUUGGGGUGGACUUUUCAUCUUUCUCUUACACUUCGU
...................(((......))).........(((((((((((((.........))))))))).))))......................... (-15.40 = -14.96 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:59 2006