Locus 2418

Sequence ID 2L_DroMel_CAF1
Location 6,604,725 – 6,604,816
Length 91
Max. P 0.613067
window3890

overview

Window 0

Location 6,604,725 – 6,604,816
Length 91
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 84.70
Mean single sequence MFE -29.76
Consensus MFE -19.13
Energy contribution -19.41
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.96
Structure conservation index 0.64
SVM decision value 0.16
SVM RNA-class probability 0.613067
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6604725 91 - 22407834
AAAUUUGCCCAGCCACU-CCACAGUUUCGGGCCCAGUGGUUUGUUUUGUCUCUCCCACAAUUUGUUGCA-------GGCUGUGCCAGCUGCAGCAACUA
......((((.(..(((-....)))..)))))...((((...(........)..))))...((((((((-------(.(((...))))))))))))... ( -24.20)
>DroSec_CAF1 32034 89 - 1
AAAUUUGCCCAGCCACCGUCCCGCCUUCGGGCCCAGUGGUUUGUUUUGUCUUUCCCACAAUUUGUUGCA-------GGCUGUGGCAGCUGCAGCAA---
.....(((((((((........(((....)))...((((...(......)....))))...........-------))))).))))((....))..--- ( -29.00)
>DroSim_CAF1 33240 89 - 1
AAAUUUGCCCAGCCACCACCCCGCCUUCGGGCCCAGUGGUUUGUUUUGUCUCUGCCACAAUUUGUUGCA-------GGCUGUGGCAGCUGCAGCAA---
.....((((((((((((((...(((....)))...)))))............(((.((.....)).)))-------))))).))))((....))..--- ( -35.20)
>DroEre_CAF1 33203 91 - 1
AAAUUUGCCUUGCCACCC---CACAUUCGGGCCCAGUGGUUUGUUUUGUC--UGCCGCAAUUUGUUGCUGGCUGCUGGCUGUGGCAGCUGCAGCAA---
....(((((..(((((((---(......)))....)))))..).......--....)))).(((((((.(((((((......))))))))))))))--- ( -30.00)
>DroYak_CAF1 33781 87 - 1
AAAUUUGCCCUGCCACCCACACACUUUUGGGCCCAGUGGUUUGUUUUGUC--UGCCACAAUUCGUUGCA-------GGCUGUGGCAGCUGCAGCAA---
....((((.(((((((..(((.(((.(((....))).))).)))...(((--(((.((.....)).)))-------))).)))))))..))))...--- ( -30.40)
>consensus
AAAUUUGCCCAGCCACCCCCACACCUUCGGGCCCAGUGGUUUGUUUUGUCU_UGCCACAAUUUGUUGCA_______GGCUGUGGCAGCUGCAGCAA___
......((((..................))))...(((((..(......)...)))))...(((((((........(((((...))))))))))))... (-19.13 = -19.41 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:33 2006