Locus 2416

Sequence ID 2L_DroMel_CAF1
Location 6,602,264 – 6,602,364
Length 100
Max. P 0.983891
window3887

overview

Window 7

Location 6,602,264 – 6,602,364
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 80.45
Mean single sequence MFE -21.45
Consensus MFE -9.38
Energy contribution -9.30
Covariance contribution -0.08
Combinations/Pair 1.27
Mean z-score -3.05
Structure conservation index 0.44
SVM decision value 1.96
SVM RNA-class probability 0.983891
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6602264 100 - 22407834
AAUAAAAAAUACGACCAAAAAAGCUAAAUCGUAAAAGCGGUCAUAUUUCCCUUAUUUCAUCGCUUACAACUGAGUAAGCCUGUAAAAAUUAGGCUUACUU
.........(((((..............))))).(((((((.(((.......)))...)))))))......(((((((((((.......))))))))))) ( -22.44)
>DroSec_CAF1 29626 87 - 1
AAUAAAAAAUACGGCCCAAGAGGCUUAAUCGGAAAAACGGUCAUAUUUCCCUUAUUUCAUCGCUUACAACUGAGUAAGCACGUAAAA-------------
.........(((((((.....)))......((((.((.((........)).)).))))...((((((......)))))).))))...------------- ( -17.60)
>DroSim_CAF1 30768 87 - 1
AAUAAAAAAUACGGCCCAAGAAGCUUAAUCGGAAAAACGGUCAUAUUUCCCUCAUUUCAUCGCUUACAACUGAGUAAGCACGUAAAA-------------
.........((((......((((..(.((((......)))).)..))))............((((((......)))))).))))...------------- ( -15.80)
>DroEre_CAF1 30753 100 - 1
AAGAAAAAGUACAGCCUAAGAAGUUAAAUCGGAAAAGCCGUCAUAUUUCCCUUAUUUAAUCGCUUACAACUGAGUGAGCCUGUAAGAAUUAGGCUUACUC
.......((((.((((((((((((.....(((.....)))....))))).(((((....(((((((....)))))))....)))))..))))))))))). ( -27.70)
>DroYak_CAF1 31269 100 - 1
AAUAAAAAAGAGGUCCAAAAAAGCUCAAUCGGAAAAGCGUUCAUAUUUUCCUUAUUUAAUCGCUUACAACUGAGUAAGCCUGUAAAAAUUGGACUUACUU
.......(((((((((((............((((((.........))))))...((((...((((((......))))))...))))..)))))))).))) ( -23.70)
>consensus
AAUAAAAAAUACGGCCAAAGAAGCUAAAUCGGAAAAGCGGUCAUAUUUCCCUUAUUUCAUCGCUUACAACUGAGUAAGCCUGUAAAAAUU_G_CUUACU_
.........((((.................(((((..........)))))...........((((((......)))))).))))................ ( -9.38 =  -9.30 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:30 2006