Locus 2415

Sequence ID 2L_DroMel_CAF1
Location 6,599,318 – 6,599,426
Length 108
Max. P 0.958872
window3886

overview

Window 6

Location 6,599,318 – 6,599,426
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.16
Mean single sequence MFE -26.92
Consensus MFE -21.81
Energy contribution -21.81
Covariance contribution 0.00
Combinations/Pair 1.07
Mean z-score -2.09
Structure conservation index 0.81
SVM decision value 1.49
SVM RNA-class probability 0.958872
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6599318 108 + 22407834
AAACCGGAAACGGAAACGGGGAUGACUGCAUUCGUUAUUUAAAUCUACCUGGAGGCCAAA------------GCCAAAUCCAAAGUUCAAAUGCAAGUAAAAGCCCUAAACGGAUAACUG
...(((....)))....((((...((((((((.(..((((.........(((((((....------------)))...)))))))).).))))).))).....))))............. ( -24.80)
>DroSec_CAF1 26630 107 + 1
AAACCGGAAACGGAAACGGGGAUGACUGCAUUCGUUAUUUAAAUCUACCUGGAGGCCA-A------------GCCAAAUCCAAAGUUCAAAUGCAAGUAAAAGCCCUAAACGGAUAACUG
...(((....)))....((((...((((((((.(..((((.........(((((((..-.------------)))...)))))))).).))))).))).....))))............. ( -23.70)
>DroSim_CAF1 27834 108 + 1
AAACCGGAAACGGAAACGGGGAUGACUGCAUUCGUUAUUUAAAUCCACCUGGAGGCCAAA------------GCCAAAUCCAAAGUUCAAAUGCAAGUAAAAGCCCUAAACGGAUAACUG
...(((....)))....((((...((((((((.(..((((...(((....)))(((....------------))).......)))).).))))).))).....))))............. ( -26.80)
>DroEre_CAF1 27584 117 + 1
-AACCGG--ACGGAAACGGGGAUGACUGCAUUCGUUAUUUAAAUCCACCUGGAGGCCAAAGCCAAAUCCAAAUCCAAAUCCAAAGUUCAAAUGCAAGUAAAGGCCCUAACCGGAUAACUG
-..((((--.((....))(((...((((((((.(..((((...(((....)))(((....)))...................)))).).))))).))).....)))...))))....... ( -29.90)
>DroYak_CAF1 28131 118 + 1
AAACCGG--ACGGAAACGGGAAUGACUGCAUUUGUUAUUUAAAUCUACCUAGAGGCCAAAGUCAAAGCCAAAGCCAAAUCCAAAGUUCAAAUGCAAGUAAAAGCCCUAACCGGAUAACUG
...((((--..(....)(((....((((((((((..((((...(((....)))(((....((....))....))).......)))).))))))).))).....)))...))))....... ( -29.40)
>consensus
AAACCGGAAACGGAAACGGGGAUGACUGCAUUCGUUAUUUAAAUCUACCUGGAGGCCAAA____________GCCAAAUCCAAAGUUCAAAUGCAAGUAAAAGCCCUAAACGGAUAACUG
...(((....((....))(((...((((((((.(..((((...(((....)))(((................))).......)))).).))))).))).....)))....)))....... (-21.81 = -21.81 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:29 2006