Locus 2413

Sequence ID 2L_DroMel_CAF1
Location 6,584,348 – 6,584,439
Length 91
Max. P 0.520262
window3883

overview

Window 3

Location 6,584,348 – 6,584,439
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 79.28
Mean single sequence MFE -26.77
Consensus MFE -17.97
Energy contribution -17.30
Covariance contribution -0.67
Combinations/Pair 1.24
Mean z-score -1.18
Structure conservation index 0.67
SVM decision value -0.03
SVM RNA-class probability 0.520262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6584348 91 - 22407834
------GGAACCACGUGACAGAUAUAGCAAAUGCUAUGCCGUUAUGGCCUUGAGCUAAACUGCUGUUGACAACAGCGACAAACGCGAUGGAGGGCGG
------....((.((((((.(.((((((....))))))).))))))(((((..((.....((((((.....))))))......)).....))))))) ( -27.00)
>DroPse_CAF1 12298 97 - 1
ACACACACACACACGUGACAGUUAUAGCAAAUGCUGUGCCGUUAUGGCCUUGAGCUAAACUGCUGUUGACAACGGCACCCAAUGCUAGAUAAAGUGG
.(((.(((......))).......(((((..((..((((((((.((((.....))))(((....)))...)))))))).)).)))))......))). ( -25.80)
>DroGri_CAF1 16331 86 - 1
------GGAUGCGCGUGGCAGUUAUAGCGAACGCUAUGCCAUUAUGGCCUUGAGCUAAACUGUUGUUGACAACGGCAACCGUUG-----CAGGUAGG
------.((((.(((((((.(((......))))))))))))))...((((...((..(((.(((((((....))))))).))))-----)))))... ( -26.90)
>DroSim_CAF1 12347 91 - 1
------GGAACCACGUGACAGAUAUAGCAAAUGCUAUGCCGUUAUGGCCUUGAGCUAAACUGCUGUUGACAACAGCGCCAUACGCGAUGGUAAGAGG
------...((((((((...(.((((((....)))))).)..((((((....(((......)))((((....)))))))))))))).))))...... ( -28.70)
>DroEre_CAF1 11841 91 - 1
------GGAACCACGUGACAGAUAUAGCAAAUGCCAUGCCGUUAUGGCCUUGGGCUAAACUGCUGUUGACAACAGCGCCAAACGCGAUGGAGGGAGG
------....(((((((.......((((.((.((((((....)))))).))..))))....(((((.....)))))......)))).)))....... ( -26.40)
>DroPer_CAF1 12322 97 - 1
ACACACACACACACGUGACAGUUAUAGCAAAUGCUGUGCCGUUAUGGCCUUGAGCUAAACUGCUGUUGACAACGGCACCCAAUGCUAGAUAAAGUGG
.(((.(((......))).......(((((..((..((((((((.((((.....))))(((....)))...)))))))).)).)))))......))). ( -25.80)
>consensus
______GGAACCACGUGACAGAUAUAGCAAAUGCUAUGCCGUUAUGGCCUUGAGCUAAACUGCUGUUGACAACAGCACCAAACGCGAUGGAAAGAGG
.............((((((.(.((((((....))))))).))))))((.....)).....((((((.....)))))).................... (-17.97 = -17.30 +  -0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:26 2006