Locus 2412

Sequence ID 2L_DroMel_CAF1
Location 6,582,937 – 6,583,041
Length 104
Max. P 0.802695
window3882

overview

Window 2

Location 6,582,937 – 6,583,041
Length 104
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 87.07
Mean single sequence MFE -41.30
Consensus MFE -28.86
Energy contribution -29.30
Covariance contribution 0.44
Combinations/Pair 1.10
Mean z-score -2.10
Structure conservation index 0.70
SVM decision value 0.62
SVM RNA-class probability 0.802695
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6582937 104 - 22407834
GCCAUUCGCAUUAUCUCUGCCCCCUGGCCAGCUUGGGGAA---AGCGCAAGUGAAAGUGGGCGGCG-------AAAGCAGGUGGGGGCGGGGCACAGAGAGAUAUGGAGAGGAU
.((.(((.(((.((((((((((((..(((.((((......---.((....))..)))).))).((.-------...))....))))))(.....)..)))))))))))).)).. ( -42.00)
>DroSec_CAF1 10424 110 - 1
GCCAUUCGCAUUAUCUCUGCCCCCUGGCCAGCUUGGGGAA---AGCGCAAGUGAAAGUGGGCGGCGAAAGGCGAAAGCAGGUGG-GGCGGGGCACAGAGAGAUAGGAAGAGGAU
.((..((...(((((((((((((((.(((.(((((.(...---..).)))))....((...((.(....).))...)).))).)-)..)))))....))))))))...)))).. ( -40.80)
>DroSim_CAF1 11002 110 - 1
GCCAUUCGCAUUAUCUCUGCCCCCUGGCCAGCUUGGGGAA---AGCGCAAGUGAAAGUGGGCGGCGAAAGGCGAAAGCAGGUGG-GGCGGGGCACAGAGAGAUAGGAAGAGGAU
.((..((...(((((((((((((((.(((.(((((.(...---..).)))))....((...((.(....).))...)).))).)-)..)))))....))))))))...)))).. ( -40.80)
>DroYak_CAF1 10487 104 - 1
GCCAUUCGCAUUAUCUCUGCCCCCUGGACGGCUUGGGGAAAGUGGCGCAAGUGAAAGUGGGCGGUG-------AACGCAGGUGG-GGCGCGGC--AGGGAGAUGGAGAGUGGGU
.((((((.((((.(((((((((((..(.....)..)))......((((............(((...-------..)))......-.)))))))--)))))))))..)))))).. ( -41.61)
>consensus
GCCAUUCGCAUUAUCUCUGCCCCCUGGCCAGCUUGGGGAA___AGCGCAAGUGAAAGUGGGCGGCG_______AAAGCAGGUGG_GGCGGGGCACAGAGAGAUAGGAAGAGGAU
.((..((...((((((((((((((((.((((((((.(........).))))).....))).)))............((........)))))))....))))))))...)))).. (-28.86 = -29.30 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:25 2006