Locus 241

Sequence ID 2L_DroMel_CAF1
Location 711,486 – 711,581
Length 95
Max. P 0.934597
window386

overview

Window 6

Location 711,486 – 711,581
Length 95
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 78.97
Mean single sequence MFE -20.70
Consensus MFE -12.44
Energy contribution -12.11
Covariance contribution -0.33
Combinations/Pair 1.27
Mean z-score -2.35
Structure conservation index 0.60
SVM decision value 1.24
SVM RNA-class probability 0.934597
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 711486 95 - 22407834
UAAAACGCGUUAAACAAUGGCCAAA-CACACUC-UUGGCCAUGACAAUCAUUGCUAAAUGCUUUUGGCUAC--CCAAACAAAACCUGGAAGCUGAGUCA
................((((((((.-.......-))))))))(((.......((.....))..(..(((..--(((.........))).)))..)))). ( -22.20)
>DroVir_CAF1 122431 94 - 1
UAAAACGGGCCAAACAAUGGCCAAAAAGCACACACAGACCAUGGCAAUAAUUGCUAAAUGCUUUUGGCUACUCCCGAAAAAUGACUAAAACCAA-----
.....((((........(((((((((.((((.....)....(((((.....)))))..))))))))))))..))))..................----- ( -19.90)
>DroPse_CAF1 114471 91 - 1
UAAAACGCGCCAAACAAUGGCCAAA-AAUACAC-UCGGCCAUGACAAUUAUUGCUAAAUGCUUUCGGCUAC--CCAGA----ACCCAAGACACGGGUCG
........(((.....((((((...-.......-..))))))..........((.....))....)))...--...((----.(((.......))))). ( -20.00)
>DroEre_CAF1 100006 94 - 1
UAAAACGCGCCAAACAAUGGCUAAA-AACACU--UUGGCCAUGACAAUCAUUGCUAAAUGCUUUCGGCUAC--CCAAACAGAACCUGUAAGCUGAAUCA
......((((((.....))))....-.....(--(((((.(((.....))).)))))).)).(((((((..--....((((...)))).)))))))... ( -21.30)
>DroYak_CAF1 95922 94 - 1
UAAAACGCGCCAAACAAUGGCUAAA--ACACUC-UUGGCCAUGACAAUCAUUGCUAAAUGCUUUUGGCUAC--CCAAACAGAACCUGGAAGCUGAUUCA
......((((((((..((((((((.--......-))))))))..........((.....)).))))))...--(((.........)))..))....... ( -20.80)
>DroPer_CAF1 116448 91 - 1
UAAAACGCGCCAAACAAUGGCCAAA-AAUACAC-UCGGCCAUGACAAUUAUUGCUAAAUGCUUUCGGCUAC--CCAGA----ACCCAAGACACGGGUCG
........(((.....((((((...-.......-..))))))..........((.....))....)))...--...((----.(((.......))))). ( -20.00)
>consensus
UAAAACGCGCCAAACAAUGGCCAAA_AACACAC_UUGGCCAUGACAAUCAUUGCUAAAUGCUUUCGGCUAC__CCAAACA_AACCUAAAACCUGAGUCA
........(((.....((((((..............))))))..........((.....))....)))............................... (-12.44 = -12.11 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:58 2006