| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,562,765 – 6,562,879 |
| Length | 114 |
| Max. P | 0.635387 |
| Location | 6,562,765 – 6,562,879 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.44 |
| Mean single sequence MFE | -35.77 |
| Consensus MFE | -23.23 |
| Energy contribution | -24.73 |
| Covariance contribution | 1.51 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6562765 114 + 22407834 UCGUGGGAAUCCAAGUUGCCGCCCCAUGAUUCCAACGGCAAGGGAUCAACGUCGGUGUUGGCGAAACU-GG-----GCCUGCCAGCGCCAAAAGAUAAAUUCCUUAUCGUGUUCUUUAUA (((((((...............))))))).....(((..(((((((....(((((((((((((.....-..-----...))))))))))....)))..)))))))..))).......... ( -34.76) >DroVir_CAF1 128324 117 + 1 UCAUAUGAAUCCCAAAUGAAGGC---GGACCCCAAUGGCAAAGGAUCUGGCUCCAUGAUGUCAAAACUCGUGUCAACCCUACAGCCGCCAGAGGAUAAAUAUAAACUAGUUUUCUUCAUA ((((.((.....)).)))).(((---((.......(((((..((...((((........))))...))..))))).........))))).(((((.((((........)))))))))... ( -26.49) >DroSec_CAF1 34697 114 + 1 UCGUGGGAAUCCAAGUUGCCACCCCAUGAUUCCAACGGCAAGGGAUCCUCGUCGGUGUUGGCGAAACU-GG-----GCCUGCCAGCGCCAAAAGAUAAAUUCCUUAUUGUGUUCUUUAUA (((((((...............))))))).....((((.(((((((..((...((((((((((.....-..-----...))))))))))....))...))))))).)))).......... ( -33.26) >DroSim_CAF1 36668 114 + 1 UCGUGGGAAUCCAAGUUGCCGCCCCAUGAUUCCAACGGCAAGGGAUCCUCGUCGGUGUUGGCGAAACU-GG-----GCCUGCCAGCGCCAAAAGAUAAAUUCCUUAUCGUGUUCUUUAUA (((((((...............))))))).....(((..(((((((..((...((((((((((.....-..-----...))))))))))....))...)))))))..))).......... ( -36.06) >DroEre_CAF1 35767 114 + 1 UCGUGGGAAUCCAAGCUGCCUCCCCACGAUUCUAACGGCAAGGGAUCUUCAUCGGUGUUGGCAAAACU-GG-----GUCUGCCAGCGCCAAAUGAUAAAUUUCUUGUCGUGUUCUUUAUA (((((((...............))))))).....((((((((..((..((((.((((((((((.....-..-----...))))))))))..))))...))..)))))))).......... ( -43.86) >DroYak_CAF1 36123 114 + 1 UCGUGGGAAUCCAAGCUGCCGCCCCACGAUUCCAAUGGCAAAGGAUCUACGUCGGUGCUGGCAAAACU-GG-----GCCUGCCAGCGCCAAAGGAUAAAUUCCUUAUCGUGUUCUUUAUA (((((((.......((....)))))))))..........(((((((..(((..((((((((((.....-..-----...)))))))))).(((((.....)))))..))))))))))... ( -40.21) >consensus UCGUGGGAAUCCAAGUUGCCGCCCCAUGAUUCCAACGGCAAGGGAUCUUCGUCGGUGUUGGCAAAACU_GG_____GCCUGCCAGCGCCAAAAGAUAAAUUCCUUAUCGUGUUCUUUAUA (((((((...............))))))).....((((.(((((((....(((((((((((((................))))))))))....)))..))))))).)))).......... (-23.23 = -24.73 + 1.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:19 2006